Pre_GI: BLASTN Hits

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Query: NC_008269:868000 Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence

Start: 868000, End: 910599, Length: 42600

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014814:43265004326500435109924600Mycobacterium sp. Spyr1 chromosome, complete genome01332BLASTN svgBLASTP svg
NC_008726:17761921776192180185525664Mycobacterium vanbaalenii PYR-1, complete genome4e-179636BLASTN svgBLASTP svg
NC_013235:1938889*1938889196008021192Nakamurella multipartita DSM 44233, complete genome4e-139504BLASTN svgBLASTP svg
NC_009142:25655612565561258937023810Saccharopolyspora erythraea NRRL 2338, complete genome2e-94355BLASTN svgBLASTP svg
NC_010617:19103881910388192887618489Kocuria rhizophila DC2201, complete genome2e-91345BLASTN svgBLASTP svg
NC_015957:32821833282183330581123629Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-72281BLASTN svgBLASTP svg
NC_011992:19682581968258199851030253Acidovorax ebreus TPSY, complete genome8e-45190BLASTN svgBLASTP svg
NC_012792:38567038567040991424245Variovorax paradoxus S110 chromosome 2, complete genome3e-44188BLASTN svgBLASTP svg
NC_019673:83486048348604837459925996Saccharothrix espanaensis DSM 44229 complete genome1e-43186BLASTN svgBLASTP svg
NC_011886:17703917703920120524167Arthrobacter chlorophenolicus A6, complete genome5e-37165BLASTN svgBLASTP svg
NC_006085:18591911859191188064221452Propionibacterium acnes KPA171202, complete genome5e-37165BLASTN svgBLASTP svg
NC_019964:18731671873167190103827872Halovivax ruber XH-70, complete genome1e-34157BLASTN svgBLASTP svg
NC_014039:18132051813205183638923185Propionibacterium acnes SK137 chromosome, complete genome1e-34157BLASTN svgBLASTP svg
NC_007963:32253063225306325338328078Chromohalobacter salexigens DSM 3043, complete genome7e-27131BLASTN svgBLASTP svg
NC_014814:13974291397429142156724139Mycobacterium sp. Spyr1 chromosome, complete genome1e-25127BLASTN svgBLASTP svg
NC_019968:8397*83973417325777Prevotella dentalis DSM 3688 chromosome 2, complete sequence2e-21113BLASTN svgBLASTP svg
NC_013446:26559552655955268195826004Comamonas testosteroni CNB-2, complete genome4e-19105BLASTN svgBLASTP svg
NC_014532:2108897*2108897214516836272Halomonas elongata DSM 2581, complete genome4e-19105BLASTN svgBLASTP svg
NC_008268:74857107485710750851722808Rhodococcus sp. RHA1, complete genome1e-18103BLASTN svgBLASTP svg
NC_015437:572788*57278859451621729Selenomonas sputigena ATCC 35185 chromosome, complete genome6e-18101BLASTN svgBLASTP svg
NC_013595:9149273*9149273917160722335Streptosporangium roseum DSM 43021, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008699:18163921816392183896922578Nocardioides sp. JS614, complete genome9e-1797.6BLASTN svgBLASTP svg
NC_014814:13240413240415486122458Mycobacterium sp. Spyr1 chromosome, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_012808:157156*15715618609928944Methylobacterium extorquens AM1, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_014098:1553900*1553900157609922200Bacillus tusciae DSM 2912 chromosome, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_013440:84057198405719843059924881Haliangium ochraceum DSM 14365, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_012522:58476995847699587179324095Rhodococcus opacus B4, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_019940:2931500*2931500296263931140Thioflavicoccus mobilis 8321 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_014297:12823021282302130564923348Halalkalicoccus jeotgali B3 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_014532:29891852989185301261923435Halomonas elongata DSM 2581, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_015422:111870118701Alicycliphilus denitrificans K601 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008268:70522027052202707309920898Rhodococcus sp. RHA1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_011146:38271938271941560632888Geobacter bemidjiensis Bem, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_020126:5152359*5152359517395921601Myxococcus stipitatus DSM 14675, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008789:7347*73473054023194Halorhodospira halophila SL1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007963:2555012*2555012257573920728Chromohalobacter salexigens DSM 3043, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007333:174389017438901873648129759Thermobifida fusca YX, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013169:1058463*1058463108536926907Kytococcus sedentarius DSM 20547, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_013204:29555002955500298012224623Eggerthella lenta DSM 2243, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_015164:34312793431279345941528137Bacteroides salanitronis DSM 18170 chromosome, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_015711:89092568909256892967320418Myxococcus fulvus HW-1 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012590:63765163765166603928389Corynebacterium aurimucosum ATCC 700975, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008095:71390567139056716265723602Myxococcus xanthus DK 1622, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007333:14110501411050143510924060Thermobifida fusca YX, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004578:60899586089958612236632409Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007777:11704061170406118994019535Frankia sp. CcI3, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_008786:26695926695929188324925Verminephrobacter eiseniae EF01-2, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_014924:25170682517068254012823061Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_015656:16534501653450168062227173Frankia symbiont of Datisca glomerata chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_018524:46567864656786467595719172Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015683:22799042279904231865238749Corynebacterium ulcerans BR-AD22 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_014935:1223817*1223817126609942283Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008313:21423972142397216633723941Ralstonia eutropha H16 chromosome 1, complete sequence3e-0765.9BLASTN svgBLASTP svg
NC_001263:2461941*2461941248301921079Deinococcus radiodurans R1 chromosome 1, complete sequence3e-0765.9BLASTN svgBLASTP svg
NC_002696:2829002*2829002285565626655Caulobacter crescentus CB15, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_006677:215466*21546625730741842Gluconobacter oxydans 621H, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015580:32525343252534327642423891Novosphingobium sp. PP1Y, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_018691:76156076156078254520986Alcanivorax dieselolei B5 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_019673:2635585*2635585265953723953Saccharothrix espanaensis DSM 44229 complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014915:33207683320768336792347156Geobacillus sp. Y412MC52 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013411:33147993314799335852243724Geobacillus sp. Y412MC61, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_012522:78711737871173789754126369Rhodococcus opacus B4, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_012522:78370717837071785964122571Rhodococcus opacus B4, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_011894:95789795789798052222626Methylobacterium nodulans ORS 2060, complete genome5e-0661.9BLASTN svgBLASTP svg