Pre_GI: BLASTN Hits

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Query: NC_008268:2313583 Rhodococcus sp. RHA1, complete genome

Start: 2313583, End: 2344488, Length: 30906

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012522:2031786*2031786206157229787Rhodococcus opacus B4, complete genome012830BLASTN svgBLASTP svg
NC_008271:35909359096246126553Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence01610BLASTN svgBLASTP svg
NC_012522:78370717837071785964122571Rhodococcus opacus B4, complete genome2e-156561BLASTN svgBLASTP svg
NC_008271:14084614084616654625701Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence4e-95357BLASTN svgBLASTP svg
NC_019950:48188148188150600724127Mycobacterium canettii CIPT 140060008 complete genome5e-30141BLASTN svgBLASTP svg
NC_000962:47581647581649961923804Mycobacterium tuberculosis H37Rv, complete genome2e-29139BLASTN svgBLASTP svg
NC_002755:47287247287249645723586Mycobacterium tuberculosis CDC1551, complete genome2e-29139BLASTN svgBLASTP svg
NC_002945:47683547683550063823804Mycobacterium bovis AF2122/97, complete genome2e-29139BLASTN svgBLASTP svg
NC_008769:50700050700053043423435Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome2e-29139BLASTN svgBLASTP svg
NC_009525:47709347709350092923837Mycobacterium tuberculosis H37Ra, complete genome2e-29139BLASTN svgBLASTP svg
NC_009565:47950047950050278923290Mycobacterium tuberculosis F11, complete genome2e-29139BLASTN svgBLASTP svg
NC_012207:47750047750050076723268Mycobacterium bovis BCG str. Tokyo 172, complete genome2e-29139BLASTN svgBLASTP svg
NC_015848:48350048350050998826489Mycobacterium canettii CIPT 140010059, complete genome2e-29139BLASTN svgBLASTP svg
NC_010612:83564883564886299927352Mycobacterium marinum M, complete genome2e-20109BLASTN svgBLASTP svg
NC_002677:332923*33292335401721095Mycobacterium leprae TN, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_011896:332939*33293935403321095Mycobacterium leprae Br4923, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_007777:28410002841000290393262933Frankia sp. CcI3, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_013595:71957647195764721894723184Streptosporangium roseum DSM 43021, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_015564:48499448499451314828155Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008268:5781604*5781604581424432641Rhodococcus sp. RHA1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014659:4299552*4299552434331043759Rhodococcus equi 103S, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014659:3654979*3654979368109926121Rhodococcus equi 103S, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012522:5952307*5952307597971027404Rhodococcus opacus B4, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008278:2772726*2772726280322330498Frankia alni ACN14a, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008278:2732890*2732890278559152702Frankia alni ACN14a, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002944:12854361285436132132435889Mycobacterium avium subsp. paratuberculosis K-10, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_012490:2006716*2006716203398627271Rhodococcus erythropolis PR4, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008060:306170*30617034178635617Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_008542:855347*85534788974734401Burkholderia cenocepacia HI2424 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_008611:2615204*2615204263604620843Mycobacterium ulcerans Agy99, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010508:809974*80997484542135448Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010612:3745332*3745332378131835987Mycobacterium marinum M, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020133:2886541*2886541291380027260Mycobacterium liflandii 128FXT, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010612:1005778*1005778103880533028Mycobacterium marinum M, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010612:3969244*3969244401404344800Mycobacterium marinum M, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014228:1929665*1929665198074651082Xenorhabdus nematophila ATCC 19061, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_020126:5608880*5608880564065231773Myxococcus stipitatus DSM 14675, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_020133:942375*94237596559923225Mycobacterium liflandii 128FXT, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_020133:3787844*3787844381646528622Mycobacterium liflandii 128FXT, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008596:421882*42188246586743986Mycobacterium smegmatis str. MC2 155, complete genome9e-0763.9BLASTN svgBLASTP svg