Pre_GI Gene

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Host: NC_008542 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008542:855347 Burkholderia cenocepacia HI2424 chromosome 1, complete sequence

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
855347856321975tRNA delta2-isopentenylpyrophosphate transferaseQuickGO ontologyBLASTP
8563188583212004DNA mismatch repair protein MutLQuickGO ontologyBLASTP
858453859187735putative DedA family transmembrane proteinQuickGO ontologyBLASTP
8594788605031026transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
860633861445813MscS Mechanosensitive ion channelQuickGO ontologyBLASTP
8615938635301938Capsule polysaccharide biosynthesisQuickGO ontologyBLASTP
8635658647641200glycosyl transferase group 1QuickGO ontologyBLASTP
8648308660591230polysaccharide export proteinQuickGO ontologyBLASTP
8662918684202130glycosyl transferase family 2QuickGO ontologyBLASTP
8688838702771395hypothetical proteinBLASTP
8702748714881215glycosyl transferase group 1QuickGO ontologyBLASTP
8715068737282223glycosyl transferase group 1QuickGO ontologyBLASTP
873833874489657ABC transporter relatedQuickGO ontologyBLASTP
874486875313828ABC-2 type transporterQuickGO ontologyBLASTP
8752858764331149lipopolysaccharide biosynthesisQuickGO ontologyBLASTP
8776728788771206Capsule polysaccharide biosynthesisQuickGO ontologyBLASTP
878900879655756short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
8796578811951539sulfataseQuickGO ontologyBLASTP
8811998888337635beta-ketoacyl synthaseQuickGO ontologyBLASTP
888830889747918UDP-3-0-acyl N-acetylglucosamine deacetylaseQuickGO ontologyBLASTP