Query: NC_006155:4302826 Yersinia pseudotuberculosis IP 32953, complete genome
Start: 4302826, End: 4324579, Length: 21754
Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010634:4234932 | 4234932 | 4255676 | 20745 | Yersinia pseudotuberculosis PB1/+, complete genome | 0 | 20910 | BLASTN svg | BLASTP svg |
NC_003143:4006884 | 4006884 | 4028579 | 21696 | Yersinia pestis CO92, complete genome | 0 | 20590 | BLASTN svg | BLASTP svg |
NC_010465:429095 | 429095 | 452493 | 23399 | Yersinia pseudotuberculosis YPIII, complete genome | 0 | 20560 | BLASTN svg | BLASTP svg |
NC_008149:4053363 | 4053363 | 4072744 | 19382 | Yersinia pestis Nepal516, complete genome | 0 | 11880 | BLASTN svg | BLASTP svg |
NC_005810:4469156 | 4469156 | 4488730 | 19575 | Yersinia pestis biovar Microtus str. 91001, complete genome | 0 | 11880 | BLASTN svg | BLASTP svg |
NC_004088:266543 | 266543 | 285923 | 19381 | Yersinia pestis KIM, complete genome | 0 | 11880 | BLASTN svg | BLASTP svg |
CP002185:234719* | 234719 | 254685 | 19967 | Escherichia coli W, complete genome | 2e-81 | 311 | BLASTN svg | BLASTP svg |
NC_012962:1068102 | 1068102 | 1121697 | 53596 | Photorhabdus asymbiotica, complete genome | 2e-75 | 291 | BLASTN svg | BLASTP svg |
NC_005126:349658 | 349658 | 400295 | 50638 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 4e-73 | 283 | BLASTN svg | BLASTP svg |
NC_014228:3353896 | 3353896 | 3385445 | 31550 | Xenorhabdus nematophila ATCC 19061, complete genome | 3e-61 | 244 | BLASTN svg | BLASTP svg |
NC_013421:1143500 | 1143500 | 1169486 | 25987 | Pectobacterium wasabiae WPP163, complete genome | 3e-61 | 244 | BLASTN svg | BLASTP svg |
NC_014228:4331327 | 4331327 | 4354369 | 23043 | Xenorhabdus nematophila ATCC 19061, complete genome | 8e-59 | 236 | BLASTN svg | BLASTP svg |
NC_014228:3442159 | 3442159 | 3467723 | 25565 | Xenorhabdus nematophila ATCC 19061, complete genome | 3e-58 | 234 | BLASTN svg | BLASTP svg |
NC_012962:293976 | 293976 | 315225 | 21250 | Photorhabdus asymbiotica, complete genome | 2e-53 | 218 | BLASTN svg | BLASTP svg |
NC_008570:1986466* | 1986466 | 2010518 | 24053 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 7e-47 | 196 | BLASTN svg | BLASTP svg |
NC_014228:1336466* | 1336466 | 1358333 | 21868 | Xenorhabdus nematophila ATCC 19061, complete genome | 2e-44 | 188 | BLASTN svg | BLASTP svg |
NC_014228:2883500 | 2883500 | 2920665 | 37166 | Xenorhabdus nematophila ATCC 19061, complete genome | 2e-44 | 188 | BLASTN svg | BLASTP svg |
NC_013592:1424560 | 1424560 | 1450216 | 25657 | Dickeya dadantii Ech586, complete genome | 2e-34 | 155 | BLASTN svg | BLASTP svg |
NC_015968:4117835* | 4117835 | 4167111 | 49277 | Enterobacter asburiae LF7a chromosome, complete genome | 8e-25 | 123 | BLASTN svg | BLASTP svg |
NC_014323:4619344* | 4619344 | 4652417 | 33074 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_008570:2014151* | 2014151 | 2040149 | 25999 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_015566:4662171 | 4662171 | 4687413 | 25243 | Serratia sp. AS12 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014306:1981956 | 1981956 | 2008369 | 26414 | Erwinia billingiae Eb661, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014500:894136 | 894136 | 935464 | 41329 | Dickeya dadantii 3937 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_013421:2613137* | 2613137 | 2636822 | 23686 | Pectobacterium wasabiae WPP163, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_012912:2901021* | 2901021 | 2925188 | 24168 | Dickeya zeae Ech1591, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012912:1701231* | 1701231 | 1749631 | 48401 | Dickeya zeae Ech1591, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007963:2555012* | 2555012 | 2575739 | 20728 | Chromohalobacter salexigens DSM 3043, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007005:5882205 | 5882205 | 5921003 | 38799 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_005773:1675793 | 1675793 | 1698612 | 22820 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014500:3097362* | 3097362 | 3187930 | 90569 | Dickeya dadantii 3937 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |