Pre_GI: BLASTP Hits

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Query: NC_017328:3935185:3946993 Shigella flexneri 2002017 chromosome, complete genome

Start: 3946993, End: 3947466, Length: 474

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010410:3606826:367691636769163677389474Acinetobacter baumannii AYE, complete genomeDihydrofolate reductase type 1 (Dihydrofolate reductase type I) (Trimethoprim resistance protein)8e-88322
NC_003384:109036:120417120417120899483Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidputative dihydrofolate reductase2e-64244
NC_011751:4992500:499427849942784994751474Escherichia coli UMN026 chromosome, complete genome7e-62235
NC_011753:2018500:202857920285792029130552Vibrio splendidus LGP32 chromosome 1, complete genomeDihydrofolate reductase4e-57219
NC_012778:1819559:184213918421391842612474Eubacterium eligens ATCC 27750, complete genomedihydrofolate reductase2e-1995.1
NC_021182:2360500:238190423819042382407504Clostridium pasteurianum BC1, complete genomedihydrofolate reductase3e-1787.4
NC_013422:1755875:178450517845051785002498Halothiobacillus neapolitanus c2, complete genomeDihydrofolate reductase6e-1786.7
NC_015222:983647:998047998047998550504Nitrosomonas sp. AL212 chromosome, complete genomedihydrofolate reductase region8e-1786.3
NC_010159:770172:792326792326792808483Yersinia pestis Angola, complete genomedihydrofolate reductase1e-1685.9
NC_009465:938378:961807961807962298492Candidatus Vesicomyosocius okutanii HA, complete genomedihydrofolate reductase1e-1685.5
NC_016516:1751336:176862717686271769097471Propionibacterium acnes TypeIA2 P.acn33 chromosome, completedihydrofolate reductase2e-1684.7
NC_002939:579087:599582599582600064483Geobacter sulfurreducens PCA, complete genomedihydrofolate reductase1e-1582.4
NC_009749:221311:224102224102224644543Francisella tularensis subsp. holarctica FTA, complete genomedihydrofolate reductase1e-1582.4
NC_006570:324974:327765327765328265501Francisella tularensis subsp. tularensis Schu 4, complete genomedihydrofolate reductase type I4e-1580.5
NC_008245:324926:327717327717328217501Francisella tularensis subsp. tularensis FSC 198, complete genomedihydrofolate reductase type I4e-1580.5
NC_009257:1636633:166358816635881664112525Francisella tularensis subsp. tularensis WY96-3418 chromosome,dihydrofolate reductase type I4e-1580.5
NC_008369:221382:224173224173224715543Francisella tularensis subsp. holarctica OSU18, complete genomedihydrofolate reductase4e-1580.5
NC_007880:221674:224465224465225007543Francisella tularensis subsp. holarctica, complete genomedihydrofolate reductase type I4e-1580.5
NC_010677:1621500:164789016478901648432543Francisella tularensis subsp. mediasiatica FSC147, complete genomedihydrofolate reductase4e-1580.5
NC_016933:324883:327674327674328216543Francisella tularensis TIGB03 chromosome, complete genomeDihydrofolate reductase4e-1580.5
NC_016933:400790:403581403581404123543Francisella tularensis TIGB03 chromosome, complete genomeDihydrofolate reductase4e-1580.5
NC_016937:324883:327674327674328216543Francisella tularensis subsp. tularensis TI0902 chromosome,Dihydrofolate reductase4e-1580.5
NC_014039:1766049:177976717797671780237471Propionibacterium acnes SK137 chromosome, complete genomedihydrofolate reductase3e-1580.5
NC_008601:246583:249457249457249999543Francisella tularensis subsp. novicida U112, complete genomedihydrofolate reductase type I7e-1579.7
NC_020388:1479568:154734815473481547851504Natronomonas moolapensis 8.8.11 complete genomedihydrofolate reductase2e-1478.2
NC_015696:220798:227489227489227986498Francisella sp. TX077308 chromosome, complete genomedihydrofolate reductase2e-1478.2
NC_011833:147426:149143149143149628486Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,dihydrofolate reductase3e-1477.4
NC_002528:148274:149125149125149610486Buchnera aphidicola str. APS (Acyrthosiphon pisum), completedihydrofolate reductase3e-1477.4
NC_018748:1311465:133017313301731330667495Emticicia oligotrophica DSM 17448 chromosome, complete genomedihydrofolate reductase region6e-1476.6
NC_008826:170609:195098195098195877780Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceDihydrofolate reductase7e-1476.3
NC_016632:170000:209977209977210462486Serratia symbiotica str. 'Cinara cedri' chromosome, completedihydrofolate reductase7e-1476.3
NC_017256:144854:149247149247149729483Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,dihydrofolate reductase8e-1476.3
NC_012559:731859:754594754594755097504Laribacter hongkongensis HLHK9, complete genomeDihydrofolate reductase1e-1375.9
NC_007973:2773427:279444427944442794944501Ralstonia metallidurans CH34 chromosome 1, complete sequencedihydrofolate reductase region2e-1374.7
NC_019842:2134803:216097721609772161462486Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,dihydrofolate reductase3e-1373.9
NC_009725:2072475:210295421029542103439486Bacillus amyloliquefaciens FZB42, complete genomeDfrA3e-1373.9
NC_017342:1848031:188789018878901888369480Staphylococcus aureus subsp. aureus TCH60 chromosome, completedihydrofolate reductase4e-1373.9
NC_007622:1397407:139740713974071397886480Staphylococcus aureus RF122, complete genometrimethoprim-sensitive dihydrofolate reductase4e-1373.9
NC_004545:141478:146011146011146505495Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomedihydrofolate reductase5e-1373.6
NC_016941:1411500:141236614123661412845480Staphylococcus aureus subsp. aureus MSHR1132, complete genomedihydrofolate reductase type I9e-1372.4
NC_015501:938196:956944956944957465522Porphyromonas asaccharolytica DSM 20707 chromosome, completeDihydrofolate reductase1e-1272.4
NC_013851:2441407:245891824589182459436519Allochromatium vinosum DSM 180 chromosome, complete genomeDihydrofolate reductase1e-1272.4
NC_016838:85487:108291108291108761471Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1,putative dihydrofolate reductase4e-1270.5
NC_014448:65000:793607936079839480Mycoplasma hyorhinis HUB-1 chromosome, complete genomeBifunctional protein including dihydrofolate reductase and deoxycytidylate deaminase family domains7e-1269.7
NC_004061:146862:149938149938150423486Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomedihydrofolate reductase2e-1168.2
NC_014752:324832:338541338541339071531Neisseria lactamica ST-640, complete genomedihydrofolate reductase4e-1167.4
NC_011146:3206000:322812032281203229040921Geobacter bemidjiensis Bem, complete genomedihydrofolate reductase region4e-1167
NC_020125:1853208:185573318557331856446714Riemerella anatipestifer RA-CH-2, complete genomeDihydrofolate reductase4e-1167
NC_008767:1888950:190370319037031904191489Neisseria meningitidis FAM18, complete genomedihydrofolate reductase8e-1166.2
NC_014330:2409559:242795924279592428459501Brachyspira pilosicoli 95/1000 chromosome, complete genomedihydrofolate reductase8e-1166.2
NC_019908:852230:851733851733852233501Brachyspira pilosicoli P43/6/78 chromosome, complete genomedihydrofolate reductase1e-1065.9
NC_018604:1329228:134843413484341348934501Brachyspira pilosicoli WesB complete genomedihydrofolate reductase3e-1064.3
NC_015977:935798:961220961220961711492Roseburia hominis A2-183 chromosome, complete genomedihydrofolate reductase4e-1063.9
NC_015703:4933430:498323349832334983724492Runella slithyformis DSM 19594 chromosome, complete genomedihydrofolate reductase region8e-1062.8
NC_007164:511171:527465527465528169705Corynebacterium jeikeium K411, complete genomehypothetical protein1e-0962.4
NC_017190:2130651:214683421468342147340507Bacillus amyloliquefaciens LL3 chromosome, complete genomeDihydrofolate reductase2e-0961.2
NC_012590:850130:865346865346865891546Corynebacterium aurimucosum ATCC 700975, complete genomeDihydrofolate reductase3e-0961.2
NC_015683:732668:743918743918744445528Corynebacterium ulcerans BR-AD22 chromosome, complete genomedihydrofolate reductase4e-0960.5
NC_013316:81969:819698196982463495Clostridium difficile R20291, complete genomedihydrofolate reductase region9e-0959.3
NC_017191:1173989:131123313112331311751519Bacillus amyloliquefaciens XH7 chromosome, complete genomedihydrofolate reductase2e-0858.2
NC_017188:1172181:130965613096561310174519Bacillus amyloliquefaciens TA208 chromosome, complete genomeDihydrofolate reductase2e-0858.2
NC_008212:1685367:169890116989011699488588Haloquadratum walsbyi DSM 16790, complete genomedihydrofolate reductase2e-0858.2
NC_013199:1407742:140862914086291409120492Lactobacillus rhamnosus Lc 705, complete genomedihydrofolate Reductase (NADPH)3e-0857.8
NC_002935:781172:797137797137797640504Corynebacterium diphtheriae NCTC 13129, complete genomePutative folate reductase6e-0856.6
NC_009615:4563831:456960045696004570097498Parabacteroides distasonis ATCC 8503 chromosome, complete genomedihydrofolate reductase6e-0856.6
NC_015673:397947:415915415915416598684Corynebacterium resistens DSM 45100 chromosome, complete genomedihydrofolate reductase2e-0754.7