Pre_GI: BLASTP Hits

Some Help

Query: NC_017328:1075535:1110088 Shigella flexneri 2002017 chromosome, complete genome

Start: 1110088, End: 1110918, Length: 831

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:4055117:407397340739734074848876Salmonella enterica subsp. enterica serovar Typhimurium strbeta-lactamase OXA-11e-145515
NC_008609:142471:184864184864185730867Pelobacter propionicus DSM 2379, complete genomeBeta-lactamase2e-52206
NC_007109:1335037:135414913541491354949801Rickettsia felis URRWXCal2, complete genomeBeta-lactamase Class D9e-41167
NC_007940:97949:122469122469123269801Rickettsia bellii RML369-C, complete genomeClass D beta-lactamase7e-39160
NC_012633:1145500:115983911598391160552714Rickettsia africae ESF-5, complete genome9e-35147
NC_007650:420745:443933443933444742810Burkholderia thailandensis E264 chromosome II, complete sequencebeta-lactamase precursor9e-35147
NC_014366:588347:604821604821605651831Gamma proteobacterium HdN1, complete genomebeta-lactamase class D (Penicillin-binding protein) (OXA-9)8e-35147
NC_014976:2420000:244532924453292446132804Bacillus subtilis BSn5 chromosome, complete genomebeta-lactamase8e-32137
NC_015376:1185000:119773711977371198543807Burkholderia gladioli BSR3 chromosome chromosome 2, completeBeta-lactamase1e-31137
NC_014376:3593500:3594074359407435958731800Clostridium saccharolyticum WM1 chromosome, complete genomeBeta-lactamase5e-30131
NC_016935:3103430:3106187310618731079861800Paenibacillus mucilaginosus 3016 chromosome, complete genomeregulatory protein BlaR15e-30131
NC_015690:2553837:2556660255666025584591800Paenibacillus mucilaginosus KNP414 chromosome, complete genomeregulatory protein BlaR12e-29129
NC_009848:2335265:234922223492222350097876Bacillus pumilus SAFR-032, complete genomebeta-lactamase1e-27123
NC_013406:4023367:402336740233674024176810Paenibacillus sp. Y412MC10 chromosome, complete genomebeta-lactamase1e-22107
NC_015977:3215770:3266112326611232679081797Roseburia hominis A2-183 chromosome, complete genomeBeta-lactamase4e-22105
NC_006512:1942000:1942054194205419434721419Idiomarina loihiensis L2TR, complete genomeBeta-lactamase class D (N-terminal domain) fused to uncharacterized conserved domain2e-21103
NC_013446:2961647:296674129667412967490750Comamonas testosteroni CNB-2, complete genomeBeta-lactamase4e-1995.5
NC_013893:1723939:1722192172219217239491758Staphylococcus lugdunensis HKU09-01 chromosome, complete genomeBeta-lactamase regulatory sensor-transducer BlaR15e-1995.1
NC_006663:1:2651265144081758Staphylococcus epidermidis RP62A plasmid pSERP, complete sequenceregulatory protein BlaR15e-1995.1
NC_017347:2724313:2724313272431327260701758Staphylococcus aureus subsp. aureus T0131 chromosome, completeBlaR15e-1994.7
NC_010410:3606826:365687736568773657677801Acinetobacter baumannii AYE, complete genomeBeta-lactamase OXA-10 precursor5e-1891.7
NC_010611:240839:251962251962252762801Acinetobacter baumannii ACICU, complete genomeBeta-lactamase class D4e-1788.6
NC_020125:1853208:185320818532081854137930Riemerella anatipestifer RA-CH-2, complete genomeBeta-lactamase class D2e-1582.8
NC_018012:1628364:164073916407391641515777Thiocystis violascens DSM 198 chromosome, complete genomebeta-lactamase class D2e-1582.8
NC_018012:3300000:331537333153733316149777Thiocystis violascens DSM 198 chromosome, complete genomebeta-lactamase class D1e-1377
NC_015866:1144958:116446311644631164735273Rickettsia heilongjiangensis 054 chromosome, complete genomeputative beta-lactamase1e-1067
NC_003103:1133806:115026611502661150538273Rickettsia conorii str. Malish 7, complete genomesimilarity to beta-lactamase4e-1065.5
NC_010263:1135932:115168211516821151954273Rickettsia rickettsii str. Iowa, complete genomebeta-lactamase7e-1064.7
NC_009882:1123709:114012511401251140397273Rickettsia rickettsii str. 'Sheila Smith', complete genomehypothetical protein7e-1064.7
NC_016908:1136082:115183011518301152102273Rickettsia rickettsii str. Colombia chromosome, complete genomebeta-lactamase7e-1064.7
NC_016909:1136210:115196011519601152232273Rickettsia rickettsii str. Arizona chromosome, complete genomebeta-lactamase7e-1064.7
NC_016911:1136584:115233411523341152606273Rickettsia rickettsii str. Hauke chromosome, complete genomebeta-lactamase7e-1064.7
NC_016913:24000:283592835928631273Rickettsia rickettsii str. Brazil chromosome, complete genomebeta-lactamase7e-1064.7
NC_016914:1136700:115245011524501152722273Rickettsia rickettsii str. Hino chromosome, complete genomebeta-lactamase7e-1064.7
NC_016930:1154500:117095411709541171226273Rickettsia philipii str. 364D chromosome, complete genomebeta-lactamase7e-1064.7
NC_017065:1144500:115925911592591159531273Rickettsia slovaca str. D-CWPP chromosome, complete genomebeta-lactamase9e-1064.3
NC_009900:1220082:123759712375971237824228Rickettsia massiliae MTU5, complete genome1e-0860.8