Pre_GI: BLASTP Hits

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Query: NC_016830:5109953:5116855 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 5116855, End: 5121579, Length: 4725

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5109953:5131208513120851361844977Pseudomonas fluorescens F113 chromosome, complete genomeYD repeat protein01566
NC_009512:4287605:4295234429523442990793846Pseudomonas putida F1, complete genomeYD repeat-containing protein0937
NC_017986:1042642:1053283105328310571283846Pseudomonas putida ND6 chromosome, complete genomeYD repeat-/RHS repeat-containing protein0937
NC_010322:1623599:1638966163896616429043939Pseudomonas putida GB-1 chromosome, complete genomeYD repeat-containing protein0760
NC_015733:1680500:1685350168535016891323783Pseudomonas putida S16 chromosome, complete genomeYD repeat/RHS repeat-containing protein0753
NC_010501:1629107:1634063163406316390394977Pseudomonas putida W619, complete genomeYD repeat protein0728
NC_009512:4287605:4307156430715643123275172Pseudomonas putida F1, complete genomeYD repeat protein1e-178627
NC_010322:1623599:1627462162746216325315070Pseudomonas putida GB-1 chromosome, complete genomeYD repeat-containing protein3e-176620
NC_010694:614985:6149856149856199614977Erwinia tasmaniensis, complete genomeSimilar to Nematicidal protein 28e-152539
NC_012214:3502992:3519126351912635240904965Erwinia pyrifoliae Ep1/96, complete genomeNematicidal protein9e-144512
NC_014228:1712339:1716790171679017217544965Xenorhabdus nematophila ATCC 19061, complete genomeputative Nematicidal protein 24e-121437
NC_013892:2108175:2155453215545321598414389Xenorhabdus bovienii SS-2004 chromosome, complete genomeNematicidal protein 24e-117424
NC_010067:4418000:4427234442723444311303897Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-96355
NC_009668:46010:5085650856559525097Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceYD repeat-containing protein3e-73278
NC_009783:1665610:1681367168136716860464680Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein3e-63244
NC_010506:4951500:4969347496934749731503804Shewanella woodyi ATCC 51908, complete genomeYD repeat protein8e-56220
NC_013971:1283942:1297034129703413021245091Erwinia amylovora ATCC 49946 chromosome, complete genomeRHS family protein4e-53211
NC_013961:1246454:1259504125950412645945091Erwinia amylovora, complete genomeTeneurin-12e-52209
NC_013971:1283942:1291766129176612968955130Erwinia amylovora ATCC 49946 chromosome, complete genomeRHS family protein6e-46187
NC_013961:1246454:1254272125427212593655094Erwinia amylovora, complete genomeProtein rhsC precursor1e-45186
NC_010694:2565580:2576972257697225820625091Erwinia tasmaniensis, complete genomeNematicidal protein 23e-41172
NC_004578:5623783:5636765563676556417745010Pseudomonas syringae pv. tomato str. DC3000, complete genomeYD repeat protein2e-39165
NC_012214:2673058:2684270268427026893635094Erwinia pyrifoliae Ep1/96, complete genomeSimilar to the nematicidal protein 22e-36156
NC_010694:2565580:2571660257166025767505091Erwinia tasmaniensis, complete genomeSimilar to the nematicidal protein 25e-28127
NC_012214:2673058:2679038267903826841285091Erwinia pyrifoliae Ep1/96, complete genomeSimilar to the nematicidal protein 29e-28127
NC_015733:1680500:1684093168409316853251233Pseudomonas putida S16 chromosome, complete genomeYD repeat-containing protein3e-27125
NC_002947:4805060:481730448173044818098795Pseudomonas putida KT2440, complete genomehypothetical protein8e-20100
NC_005085:2609934:2628514262851426296831170Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein7e-1997.4
NC_005085:2457295:2462175246217524632871113Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein1e-1897.1
NC_007492:2310793:2323362232336223280924731Pseudomonas fluorescens PfO-1, complete genomeRhs family protein4e-1894.7
NC_010506:4951500:4968117496811749693221206Shewanella woodyi ATCC 51908, complete genomehypothetical protein1e-1793.6
NC_013722:2848366:2858130285813028635685439Xanthomonas albilineans, complete genomeputative rhs family protein2e-1483.2
NC_005085:2609934:2613466261346626145661101Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein2e-1482.4
NC_008027:4280000:4290862429086242956764815Pseudomonas entomophila L48, complete genomehypothetical protein2e-1276.3
NC_007954:138410:1538731538731613667494Shewanella denitrificans OS217, complete genomeIntegrins alpha chain6e-1274.7
NC_020541:268406:2762482762482803034056Rhodanobacter sp. 2APBS1, complete genomeRHS repeat-associated core domain protein6e-1171.2
NC_007645:5747721:57599405759940577152811589Hahella chejuensis KCTC 2396, complete genomeRhs family protein8e-1170.9
NC_007645:2112622:21126222112622212455211931Hahella chejuensis KCTC 2396, complete genomeRhs family protein3e-1068.9
NC_016593:3116145:3122850312285031285165667Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein3e-1068.6
NC_012034:6469:1264412644217279084Anaerocellum thermophilum DSM 6725, complete genomeYD repeat protein5e-1068.2
NC_013422:991500:1007521100752110119244404Halothiobacillus neapolitanus c2, complete genomeYD repeat protein8e-1067.4
NC_011071:10842:2076920769229852217Stenotrophomonas maltophilia R551-3, complete genomeYD repeat protein1e-0966.6
NC_015953:6212366:6222600622260062259413342Streptomyces sp. SirexAA-E chromosome, complete genomeYD repeat-containing protein3e-0965.9
NC_014310:1413210:1430985143098514356014617Ralstonia solanacearum PSI07 megaplasmid, complete sequencerhs-related transmembrane protein3e-0965.9
NC_003296:1419992:1432475143247514370284554Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE RHS-RELATED TRANSMEMBRANE PROTEIN3e-0965.5
NC_007355:4358074:4358074435807443643646291Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein3e-0965.5
NC_011899:1969187:1983804198380419906376834Halothermothrix orenii H 168, complete genomeYD repeat protein4e-0965.1
NC_008061:428501:4333524333524378364485Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencePAAR7e-0964.3
NC_008543:2035292:2041830204183020463144485Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceYD repeat protein7e-0964.3
NC_014720:4170:1290912909218938985Caldicellulosiruptor kronotskyensis 2002 chromosome, completeyd repeat protein9e-0963.9
NC_019978:1182056:1195795119579512013565562Halobacteroides halobius DSM 5150, complete genomeRHS repeat-associated core domain protein5e-0861.6
NC_013216:3061491:3079669307966930834843816Desulfotomaculum acetoxidans DSM 771, complete genomeYD repeat protein5e-0861.6
NC_009012:1663357:1664451166445116703305880Clostridium thermocellum ATCC 27405, complete genomeYD repeat protein5e-0861.6
NC_014643:1577021:1582530158253015900027473Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein5e-0861.6
NC_009380:336024:3450063450063548279822Salinispora tropica CNB-440 chromosome, complete genomeYD repeat-containing protein6e-0861.2
NC_017068:870000:8817918817918888107020Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein1e-0760.1
NC_013722:2476236:2483914248391424858721959Xanthomonas albilineans, complete genomeputative truncated rhs family protein3e-0759.3
NC_013722:2476236:2487015248701524923545340Xanthomonas albilineans, complete genomeputative rhs family protein3e-0758.9
NC_015379:2999965:29999652999965301204212078Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,conserved hypothetical protein; putative RHS domain protein5e-0758.2
NC_014392:355443:3600883600883675987511Caldicellulosiruptor obsidiansis OB47 chromosome, complete genome6e-0757.8
NC_018691:2254566:2273435227343522807487314Alcanivorax dieselolei B5 chromosome, complete genomeYD repeat protein7e-0757.8
NC_003888:5114147:5123855512385551266382784Streptomyces coelicolor A3(2), complete genomeRhs protein8e-0757.4
NC_012034:390273:3950643950644011716108Anaerocellum thermophilum DSM 6725, complete genomeYD repeat-containing protein1e-0657
NC_002936:1319266:1326822132682213323265505Dehalococcoides ethenogenes 195, complete genomeNHL/RHS/YD repeat protein1e-0657
NC_005085:1269787:1303614130361413070123399Chromobacterium violaceum ATCC 12472, complete genomeprobable rhs-related protein1e-0656.6
NC_015589:2999735:3006147300614730112195073Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeYD repeat protein2e-0656.2
NC_014393:4352216:43633464363346437395010605Clostridium cellulovorans 743B chromosome, complete genomehypothetical protein3e-0655.5
NC_009040:43791:5166551665567285064Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeYD repeat protein3e-0655.5
NC_019940:1932906:1941658194165819458364179Thioflavicoccus mobilis 8321 chromosome, complete genomeRHS repeat-associated core domain-containing protein4e-0655.1
NC_010515:2358134:2362974236297423674374464Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYD repeat protein5e-0654.7
NC_004578:5623783:5633916563391656367682853Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-0654.7
NC_020541:1510782:1519890151989015236963807Rhodanobacter sp. 2APBS1, complete genomeRHS repeat-associated core domain protein7e-0654.3
NC_014643:382500:3825663825663895586993Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein7e-0654.3
NC_011979:1128986:1135225113522511392714047Geobacter sp. FRC-32, complete genomeYD repeat protein9e-0653.9
NC_016627:1723104:1755569175556917598014233Clostridium clariflavum DSM 19732 chromosome, complete genome9e-0653.9