Pre_GI: BLASTP Hits

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Query: NC_016822:3946500:3955752 Shigella sonnei 53G, complete genome

Start: 3955752, End: 3956597, Length: 846

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3741708:375267637526763753521846Shigella sonnei Ss046, complete genomehypothetical protein2e-151534
CP002516:246767:2565802565802578021223Escherichia coli KO11, complete genome2e-144511
NC_011415:3887997:389763738976373898482846Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-144510
NC_013353:4313462:431970243197024320547846Escherichia coli O103:H2 str. 12009, complete genome4e-144510
NC_009801:3956917:396430339643033965148846Escherichia coli E24377A, complete genomehypothetical protein4e-144510
CP002185:3822470:384827138482713849116846Escherichia coli W, complete genomeconserved hypothetical protein4e-144510
AP010958:4313462:431970243197024320547846Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-144510
CU928145:3983432:4017600401760040187451146Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein7e-139493
NC_011748:3983432:4017600401760040187451146Escherichia coli 55989, complete genomehypothetical protein7e-139493
NC_009800:3685651:3693802369380236949171116Escherichia coli HS, complete genomehypothetical protein9e-134476
NC_010468:231000:2409422409422421651224Escherichia coli ATCC 8739, complete genomehypothetical protein2e-133475
NC_012967:3549880:3581981358198135832041224Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-133474
NC_012947:248000:2579722579722591951224Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-133474
NC_007613:3470314:349805534980553498849795Shigella boydii Sb227, complete genomehypothetical protein2e-132471
NC_010473:3722571:374705937470593747841783Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein9e-131466
AC_000091:3976888:398834239883423989124783Escherichia coli W3110 DNA, complete genomehypothetical protein9e-131466
NC_000913:3624826:364931436493143650096783Escherichia coli K12, complete genomehypothetical protein9e-131466
NC_017328:3655876:3664405366440536656281224Shigella flexneri 2002017 chromosome, complete genomehypothetical protein7e-105380
NC_004337:3590323:3629549362954936307721224Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-105380
NC_004337:3621985:3629549362954936307721224Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-105380
NC_008258:3581583:3589810358981035910331224Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-105380
NC_010498:3838419:3864118386411838653411224Escherichia coli SMS-3-5, complete genomehypothetical protein3e-104377
CU928160:3709081:3716476371647637176991224Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein8e-104376
NC_011741:3709081:3716476371647637176991224Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-104376
NC_013361:4566779:457352145735214574105585Escherichia coli O26:H11 str. 11368 chromosome, complete genome6e-94343
NC_004741:4132056:414370641437064144299594Shigella flexneri 2a str. 2457T, complete genome1e-77290
NC_013364:4306000:431246643124664312825360Escherichia coli O111:H- str. 11128, complete genome4e-63241
NC_013364:4306000:431198043119804312294315Escherichia coli O111:H- str. 11128, complete genome1e-53210