Pre_GI: BLASTP Hits

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Query: NC_016822:267758:278042 Shigella sonnei 53G, complete genome

Start: 278042, End: 278527, Length: 486

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:261094:2648042648042669452142Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeVgrG8e-91332
NC_002655:261236:2648622648622670032142Escherichia coli O157:H7 EDL933, complete genomehypothetical protein9e-91332
NC_011353:261220:2648462648462669872142Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeImpA family type VI secretion-associated protein9e-91332
NC_013008:261226:2648522648522669932142Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein9e-91332
CU928160:256932:2606412606412627822142Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein, putative VgrG protein, Encoded within repeats that are hotspots for chromosomal duplication formation; Function of pro8e-91332
NC_011741:256932:2606412606412627822142Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-91332
NC_002695:261235:2648612648612670022142Escherichia coli O157:H7 str. Sakai, complete genomeVgrG9e-91331
NC_007384:278810:2788102788102809512142Shigella sonnei Ss046, complete genomeunknown protein associated with Rhs element1e-90331
NC_011149:1110642:1114691111469111168322142Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion system Vgr family protein3e-68256
NC_007384:1763375:1780702178070217828102109Shigella sonnei Ss046, complete genomeunknown protein associated with Rhs element5e-65246
NC_016822:1839739:1859469185946918615772109Shigella sonnei 53G, complete genomeRhs element protein5e-65246
NC_010468:2406387:2419976241997624220842109Escherichia coli ATCC 8739, complete genometype VI secretion system Vgr family protein3e-65246
NC_015761:4188250:4211919421191942141052187Salmonella bongori NCTC 12419, complete genomeRhs family protein1e-57221
NC_011205:1227373:1227373122737312294872115Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Vgr family type VI secretion system4e-54209
NC_016831:1865681:1887460188746018895712112Salmonella enterica subsp. enterica serovar Gallinarum/pullorumRHS-family protein5e-54209
NC_011274:1129686:1135593113559311377042112Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein2e-53207
NC_008752:261903:2691812691812719042724Acidovorax avenae subsp. citrulli AAC00-1, complete genomeRhs element Vgr protein8e-30129
NC_015138:322386:3344743344743372302757Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetype VI secretion system Vgr family protein4e-29126
NC_008752:2334511:2340070234007023423162247Acidovorax avenae subsp. citrulli AAC00-1, complete genomeRhs element Vgr protein2e-1478.6
NC_011000:1397611:1406501140650114086062106Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein7e-1476.3
NC_014311:2385666:2385666238566623878762211Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein1e-1375.9
NC_011000:2732330:2768914276891427703921479Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-1375.9
NC_008390:1293823:1304226130422613063372112Burkholderia cepacia AMMD chromosome 1, complete sequenceRhs element Vgr protein2e-1375.1
NC_012724:2547500:2565465256546525676242160Burkholderia glumae BGR1 chromosome 1, complete genomeRhs element Vgr protein1e-1272.4
NC_015138:3809732:3830887383088738332292343Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetype VI secretion system Vgr family protein2e-1271.2
NC_008752:3828438:3850004385000438523282325Acidovorax avenae subsp. citrulli AAC00-1, complete genomeRhs element Vgr protein3e-1271.2
NC_004129:3452885:3452885345288534551342250Pseudomonas fluorescens Pf-5, complete genomeRhs-family protein1e-1168.9
NC_007517:306508:3174923174923196212130Geobacter metallireducens GS-15, complete genomeRhs element Vgr protein:Gp5-like6e-1063.5
NC_018000:2964500:2981696298169629840022307Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein2e-0961.2
NC_009079:402891:4069994069994092032205Burkholderia mallei NCTC 10247 chromosome I, complete sequenceRhs element Vgr protein8e-0959.7
NC_006349:400807:4048074048074070112205Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceRhs element Vgr protein8e-0959.7
NC_008835:1827905:1834956183495618371602205Burkholderia mallei NCTC 10229 chromosome I, complete sequenceRhs element Vgr protein8e-0959.7
NC_015563:3309097:3330074333007433322662193Delftia sp. Cs1-4 chromosome, complete genometype VI secretion system Vgr family protein2e-0858.5
NC_015379:3570658:3570658357065835728832226Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein2e-0858.5
NC_014355:1865003:1901360190136019036122253Candidatus Nitrospira defluvii, complete genomehypothetical protein2e-0858.2
NC_010002:4256651:4263992426399242661842193Delftia acidovorans SPH-1, complete genometype VI secretion system Vgr family protein4e-0857.4
NC_012997:1689583:1690279169027916922731995Teredinibacter turnerae T7901, complete genometype VI secretion system Vgr family protein1e-0755.8
NC_010505:1205747:1216000121600012181202121Methylobacterium radiotolerans JCM 2831, complete genometype VI secretion system Vgr family protein3e-0754.7
NC_007435:1446916:1473921147392114761252205Burkholderia pseudomallei 1710b chromosome II, complete sequenceRhs element Vgr protein subfamily, putative3e-0650.8
NC_009078:2718741:2745746274574627479502205Burkholderia pseudomallei 1106a chromosome II, complete sequenceRhs element Vgr protein5e-0650.4
NC_006351:2759708:2787212278721227894162205Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein5e-0650.4