Pre_GI: BLASTP Hits

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Query: NC_015848:483500:487078 Mycobacterium canettii CIPT 140010059, complete genome

Start: 487078, End: 487449, Length: 372

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019950:481881:486127486127486498372Mycobacterium canettii CIPT 140060008 complete genomeConserved membrane protein of unknown function2e-37154
NC_002755:472872:479880479880480251372Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein8e-37152
NC_009525:477093:481099481099481470372Mycobacterium tuberculosis H37Ra, complete genomeputative conserved transmembrane protein8e-37152
NC_012207:477500:480937480937481308372Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative transmembrane protein8e-37152
NC_002945:476835:480808480808481179372Mycobacterium bovis AF2122/97, complete genometransmembrane protein8e-37152
NC_008769:507000:510604510604510975372Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative transmembrane protein8e-37152
NC_000962:475816:479789479789480160372Mycobacterium tuberculosis H37Rv, complete genomePROBABLE CONSERVED TRANSMEMBRANE PROTEIN8e-37152
NC_009565:479500:482959482959483330372Mycobacterium tuberculosis F11, complete genomeconserved transmembrane protein8e-37152
NC_012943:476500:480048480048480419372Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein8e-37152
NC_016768:476500:480048480048480419372Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein8e-37152
NC_016804:477500:480938480938481309372Mycobacterium bovis BCG str. Mexico chromosome, complete genometransmembrane protein8e-37152
NC_017026:476500:480091480091480462372Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein8e-37152
NC_010617:1428902:143336114333611433738378Kocuria rhizophila DC2201, complete genomehypothetical protein1e-1065.1
NC_007333:537292:550441550441550815375Thermobifida fusca YX, complete genomehypothetical protein5e-0856.2