Pre_GI: BLASTP Hits

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Query: NC_015848:1708176:1720114 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1720114, End: 1720614, Length: 501

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:1686500:169696216969621697480519Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein4e-92336
NC_002755:1684161:169609916960991696617519Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein4e-92336
NC_016768:2704350:271369627136962714196501Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein4e-92336
NC_012943:2707677:271702327170232717523501Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein4e-92336
NC_019950:1689910:170069917006991701199501Mycobacterium canettii CIPT 140060008 complete genomehypothetical protein4e-92336
NC_009565:1688642:170058017005801701080501Mycobacterium tuberculosis F11, complete genomehypothetical protein4e-92336
NC_000962:1684005:169594316959431696443501Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein4e-92336
NC_009525:1685522:169746016974601697960501Mycobacterium tuberculosis H37Ra, complete genomehypothetical protein4e-92336
NC_010612:2777687:279090227909022791537636Mycobacterium marinum M, complete genomehypothetical protein6e-74276
NC_009719:3532587:354371735437173544364648Parvibaculum lavamentivorans DS-1 chromosome, complete genomeSAM-binding motif-containing protein2e-51201
NC_008380:855246:867749867749868345597Rhizobium leguminosarum bv. viciae 3841, complete genomehypothetical protein1e-50198
NC_007954:1494291:151339515133951514024630Shewanella denitrificans OS217, complete genomeMethyltransferase type 122e-1684.7
NC_008228:3679949:369216636921663692792627Pseudoalteromonas atlantica T6c, complete genomeMethyltransferase type 126e-1683.6
NC_009464:650997:687412687412688089678Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein2e-1272
NC_009925:5838500:584759958475995848276678Acaryochloris marina MBIC11017, complete genomehypothetical protein5e-1167
NC_011898:3973627:398594339859433986554612Clostridium cellulolyticum H10, complete genomeMethyltransferase type 112e-1065.1
NC_007651:3656433:366064136606413661273633Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein1e-0756.2
NC_014484:591291:605459605459606082624Spirochaeta thermophila DSM 6192 chromosome, complete genomeputative SAM-dependent methyltransferase4e-0650.8