Pre_GI: BLASTP Hits

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Query: NC_014931:1642179:1651109 Variovorax paradoxus EPS chromosome, complete genome

Start: 1651109, End: 1651702, Length: 594

Host Lineage: Variovorax paradoxus; Variovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Soil; Temp: Mesophile. Variovorax paradoxus is a nutritionally diverse organism which is commonly isolated from soil. Strains of this organism are able to degrade a number of compounds such as explosives and pesticides. Variovorax paradoxus is also a plant-growth promoting organism, increasing the resistance of the plant to disease and heavy metals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013446:2237854:225325022532502253825576Comamonas testosteroni CNB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-53206
NC_014311:1106871:112273411227341123375642Ralstonia solanacearum PSI07 chromosome, complete genomeRNA polymerase sigma factor, sigma-241e-45182
NC_017047:1434500:145073114507311451312582Rahnella aquatilis HX2 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-29129
NC_015061:1481500:149778814977881498369582Rahnella sp. Y9602 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-29129
NC_014931:1044313:106127810612781061889612Variovorax paradoxus EPS chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-27120
NC_012660:3689223:370480737048073705265459Pseudomonas fluorescens SBW25 chromosome, complete genomeputative RNA polymerase sigma factor9e-26116
NC_007963:1190847:124467112446711245285615Chromohalobacter salexigens DSM 3043, complete genomesigma-24 (FecI-like)3e-24111
NC_014532:1307983:133179013317901332392603Halomonas elongata DSM 2581, complete genomeK03088 RNA polymerase sigma-70 factor, ECF subfamily9e-23106
NC_009050:604950:619640619640620254615Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily6e-21100
NC_007509:71954:736517365174262612Burkholderia sp. 383 chromosome 3, complete sequencesigma-24 (FecI-like)5e-2097.4
NC_010678:642769:664204664204664836633Ralstonia pickettii 12J chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-1892.8
NC_010002:4175809:418865341886534189231579Delftia acidovorans SPH-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1890.9
NC_015563:3401867:340751334075133408091579Delftia sp. Cs1-4 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor8e-1890.1
NC_016906:1458158:147173414717341472315582Gordonia polyisoprenivorans VH2 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-1789.7
NC_011961:304158:307073307073307639567Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily2e-1788.6
NC_014355:3669470:367093436709343671530597Candidatus Nitrospira defluvii, complete genomeRNA polymerase sigma factor SigK (Sigma-K)4e-1787.8
NC_009925:1184442:118898911889891189603615Acaryochloris marina MBIC11017, complete genomeRNA polymerase sigma-24 subunit1e-1686.3
NC_017273:352150:380081380081380596516Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completeECF subfamily RNA polymerase sigma-24 subunit2e-1582
NC_017986:5467279:548737254873725487980609Pseudomonas putida ND6 chromosome, complete genomeRNA polymerase sigma factor9e-1580.1
NC_011886:1891077:190513119051311905970840Arthrobacter chlorophenolicus A6, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1479.7
NC_015703:5272193:529904352990435299582540Runella slithyformis DSM 19594 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1479.7
NC_017080:1194199:119784911978491198454606Phycisphaera mikurensis NBRC 102666, complete genomeRNA polymerase ECF-type sigma factor2e-1478.6
NC_019673:3041936:304282330428233043461639Saccharothrix espanaensis DSM 44229 complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1478.6
NC_008700:2451798:247336124733612474008648Shewanella amazonensis SB2B, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1477.8
NC_019897:2004050:203094520309452031553609Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-1376.3
NC_008435:854576:876605876605877288684Rhodopseudomonas palustris BisA53, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1271.6
NC_013093:2230171:223517522351752235852678Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1270.5
NC_013037:5395951:539916253991625399872711Dyadobacter fermentans DSM 18053, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-1168.2
NC_004459:1794540:181002018100201810580561Vibrio vulnificus CMCP6 chromosome I, complete sequenceRNA polymerase sigma-70 factor4e-1064.7
NC_014923:79370:919919199192533543Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRNA polymerase sigma factor, sigma-70 family5e-1064.3
NC_008319:1376938:137642913764291376980552Synechococcus sp. CC9311, complete genomeRNA polymerase sigma-70 factor family protein8e-1063.5
NC_018665:139646:154042154042154605564Exiguobacterium antarcticum B7 chromosome, complete genomeRNA polymerase sigma factor SigW1e-0963.2
NC_010556:141374:154091154091154654564Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0963.2
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit3e-0961.6
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor8e-0960.1
NC_009952:3596399:360359636035963604171576Dinoroseobacter shibae DFL 12, complete genomeRNA polymerase sigma factor1e-0859.7
NC_009092:1684467:170170617017061702344639Shewanella loihica PV-4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.7
NC_017955:2327500:232853923285392329084546Modestobacter marinus, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0858.2
NC_011898:426951:428407428407428976570Clostridium cellulolyticum H10, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0857.8
NC_014817:332000:346335346335346922588Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ecf subfamily5e-0857.8
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)7e-0857.4
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family7e-0857
NC_009615:2709040:272511227251122725837726Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0756.2
NC_008536:3160540:318629731862973186758462Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.1
NC_009921:4757148:477616347761634776723561Frankia sp. EAN1pec, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.1
NC_012491:4987280:499185249918524992427576Brevibacillus brevis NBRC 100599, complete genomeRNA polymerase ECF-type sigma factor3e-0754.7
NC_010002:4572573:461546046154604616068609Delftia acidovorans SPH-1, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0754.3
NC_004663:5194400:520235452023545202908555Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor2e-0652.4
NC_007951:2206263:220626322062632207000738Burkholderia xenovorans LB400 chromosome 1, complete sequenceSigma-24 (FecI)4e-0651.2
NC_016935:4117485:412215241221524122664513Paenibacillus mucilaginosus 3016 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-0650.8
NC_011916:2967624:299003329900332990593561Caulobacter crescentus NA1000 chromosome, complete genomeRNA polymerase sigma factor9e-0650.1
NC_002696:2941644:296405329640532964613561Caulobacter crescentus CB15, complete genomeRNA polymerase sigma-70 factor9e-0650.1