Pre_GI: BLASTP Hits

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Query: NC_013410:2519441:2544337 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2544337, End: 2545560, Length: 1224

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:3023762:3040312304031230414991188Dickeya dadantii 3937 chromosome, complete genomecarbamoyl-phosphate synthase small subunit5e-44178
NC_012912:1788308:1802414180241418035951182Dickeya zeae Ech1591, complete genomeputative carbamoyl-phosphate-synthetase protein4e-43175
NC_013592:1730505:1743627174362717448081182Dickeya dadantii Ech586, complete genomeputative carbamoyl-phosphate-synthetase protein3e-42172
NC_015160:3556114:3562846356284635640511206Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative carbamoyl-phosphate-synthetase3e-37156
NC_008740:2905990:2917898291789829190941197Marinobacter aquaeolei VT8, complete genomeputative carbamoyl-phosphate-synthetase7e-36151
NC_010516:2877407:2885755288575528869001146Clostridium botulinum B1 str. Okra, complete genomeputative carbamoyl-phosphate synthase large chain2e-27123
NC_015500:900807:9104639104639116681206Treponema brennaborense DSM 12168 chromosome, complete genomeATP-grasp fold domain protein, DUF201-type1e-26120
NC_008322:1595500:1606266160626616074531188Shewanella sp. MR-7, complete genomeprotein of unknown function DUF2012e-25117
NC_011365:3676500:3686248368624836874021155Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative carbamoyl-phosphate-synthetase protein3e-25116
NC_013204:2826500:2847006284700628482141209Eggerthella lenta DSM 2243, complete genomeprotein of unknown function DUF2012e-24113
NC_014166:2959688:2970841297084129719501110Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein1e-20101
NC_013410:3280039:3305045330504533062861242Fibrobacter succinogenes subsp. succinogenes S85 chromosome,phosphoribosylglycinamide synthetase7e-1995.1
NC_015738:978794:9901309901309913351206Eggerthella sp. YY7918, complete genomebiotin carboxylase3e-1893.2
NC_016584:5305417:5312738531273853140301293Desulfosporosinus orientis DSM 765 chromosome, complete genomebiotin carboxylase4e-1789.4
NC_016112:3103716:3135584313558431367771194Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein4e-1685.9
NC_007645:3581114:3583320358332035845581239Hahella chejuensis KCTC 2396, complete genomeprobable carbamoylphosphate synthase8e-1685.1
NC_014150:3085013:3107308310730831094792172Brachyspira murdochii DSM 12563 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp3e-1480.1
NC_020304:2677372:2698138269813826992921155Desulfocapsa sulfexigens DSM 10523, complete genomebiotin carboxylase1e-1378.2
NC_017243:1558000:1577367157736715795142148Brachyspira intermedia PWS/A chromosome, complete genomeL-lactate dehydrogenase1e-1377.8
NC_013223:724394:7430347430347442661233Desulfohalobium retbaense DSM 5692, complete genomephosphoribosylglycinamide synthetase2e-1377.4
NC_016842:748419:7640437640437658361794Treponema pallidum subsp. pertenue str. SamoaD chromosome, completebiotin carboxylase2e-1377.4
NC_016843:747950:7642307642307660231794Treponema pallidum subsp. pertenue str. Gauthier chromosome,biotin carboxylase2e-1377.4
NC_016848:748873:7644977644977662901794Treponema pallidum subsp. pertenue str. CDC2 chromosome, completebiotin carboxylase2e-1377.4
NC_007517:480303:4953134953134965271215Geobacter metallireducens GS-15, complete genomeputative glycolate oxidase3e-1376.6
NC_015714:741044:7573247573247591171794Treponema paraluiscuniculi Cuniculi A chromosome, complete genomebiotin carboxylase3e-1376.6
NC_010741:745357:7639087639087657011794Treponema pallidum subsp. pallidum SS14, complete genomepossible phosphoribosylglycinamide formyltransferase4e-1376.3
NC_000919:746875:7624607624607642531794Treponema pallidum subsp. pallidum str. Nichols, complete genomephosphoribosylglycinamide formyltransferase, putative4e-1376.3
NC_016844:748117:7643977643977661901794Treponema pallidum subsp. pallidum DAL-1 chromosome, completebiotin carboxylase4e-1376.3
NC_017268:747429:7637097637097655021794Treponema pallidum subsp. pallidum str. Chicago chromosome,CarB family protein4e-1376.3
NC_021508:745388:7639397639397657321794Treponema pallidum subsp. pallidum SS14, complete genomebiotin carboxylase4e-1376.3
NC_016633:1798758:1810586181058618117821197Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase7e-1375.5
NC_011831:2728932:2747266274726627485221257Chloroflexus aggregans DSM 9485, complete genomephosphoribosylglycinamide synthetase6e-1375.5
NC_020409:1407857:1417655141765514188781224Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein3e-1273.2
NC_011663:1627220:1644567164456716457961230Shewanella baltica OS223 chromosome, complete genomehypothetical protein2e-1170.5
NC_015161:523278:5345035345035375743072Deinococcus proteolyticus MRP chromosome, complete genomecarbamoyl-phosphate synthase, large subunit3e-1066.6
NC_013206:21288:2917129171304031233Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446phosphoribosylglycinamide synthetase4e-1066.2
NC_016633:1798758:1812218181221818133481131Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase1e-0964.7
NC_013722:2919560:2934132293413229354031272Xanthomonas albilineans, complete genomeputative carbamoyl-phosphate synthase, cpsase protein2e-0964.3
NC_007907:456164:4590794590794623063228Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0963.5
NC_019973:5899142:5899142589914259004281287Mesorhizobium australicum WSM2073, complete genomebiotin carboxylase3e-0963.5
NC_014923:5970182:5970182597018259714681287Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeCarbamoyl-phosphate synthase L chain ATP-binding protein3e-0963.5
NC_015675:6493444:6524853652485365261391287Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp3e-0963.5
NC_011999:813978:8325118325118356843174Macrococcus caseolyticus JCSC5402, complete genomecarbamoyl-phosphate synthase large chain4e-0962.8
NC_009052:3467000:3471137347113734723541218Shewanella baltica OS155, complete genomephosphoribosylglycinamide synthetase7e-0962.4
NC_014738:469945:4781294781294813113183Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,carbamoyl-phosphate synthase large subunit6e-0962.4
NC_020125:1237536:1247235124723512504173183Riemerella anatipestifer RA-CH-2, complete genomeCarbamoylphosphate synthase large subunit6e-0962.4
NC_017045:631761:6399456399456431003156Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,6e-0962.4
NC_012214:124337:1341971341971354201224Erwinia pyrifoliae Ep1/96, complete genomeHsvC protein3e-0860.1
NC_015437:1066014:1068397106839710716273231Selenomonas sputigena ATCC 35185 chromosome, complete genomecarbamoyl-phosphate synthase, large subunit3e-0859.7
NC_004578:934867:9445129445129457561245Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-0859.3
NC_013959:1428381:1446411144641114476161206Sideroxydans lithotrophicus ES-1 chromosome, complete genomephosphoribosylglycinamide formyltransferase 29e-0858.5
NC_003888:7659639:7662638766263876638551218Streptomyces coelicolor A3(2), complete genomecarboxylase1e-0758.2
NC_010337:1445512:1445512144551214487663255Heliobacterium modesticaldum Ice1, complete genomecarbamoyl-phosphate synthase, large subunit2e-0757.4
NC_014206:1202907:1211656121165612128791224Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein2e-0757.4
NC_017219:538864:5652585652585664601203Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein3e-0757
NC_011593:533884:5654655654655666671203Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,phosphoribosylglycinamide synthetase3e-0757
NC_015381:1318818:1341068134106813423061239Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-0756.6
NC_001263:662666:6767546767546798283075Deinococcus radiodurans R1 chromosome 1, complete sequencecarbamoyl-phosphate synthase, large subunit4e-0756.2
NC_008278:5053899:5079799507979950810521254Frankia alni ACN14a, complete genomehypothetical protein4e-0756.2
NC_013525:1221604:1263705126370512650181314Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeprotein of unknown function DUF2018e-0755.5
NC_015519:2526047:2559875255987525630663192Tepidanaerobacter sp. Re1 chromosome, complete genomecarbamoyl-phosphate synthase, large subunit1e-0654.7
NC_013411:1941762:1949027194902719502621236Geobacillus sp. Y412MC61, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp1e-0654.7
NC_014915:1080793:1088971108897110902061236Geobacillus sp. Y412MC52 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp1e-0654.7
NC_014206:2516000:2542163254216325433981236Geobacillus sp. C56-T3 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp1e-0654.7
NC_009848:1494253:1504622150462215078373216Bacillus pumilus SAFR-032, complete genomecarbamoyl phosphate synthase large subunit2e-0653.9
NC_009674:2624817:2633590263359026368083219Bacillus cytotoxicus NVH 391-98 chromosome, complete genomecarbamoyl phosphate synthase large subunit2e-0653.9
NC_004578:934867:9432069432069444591254Pseudomonas syringae pv. tomato str. DC3000, complete genomenikkomycin biosynthesis domain protein4e-0653.1
NC_020299:149118:1577181577181609573240Candidatus Kinetoplastibacterium oncopeltii TCC290E, completecarbamoyl-phosphate synthase large subunit4e-0653.1
NC_015389:2030154:2071055207105520743783324Coriobacterium glomerans PW2 chromosome, complete genomecarbamoyl-phosphate synthase large subunit3e-0653.1
NC_011567:238249:2382492382492394871239Anoxybacillus flavithermus WK1, complete genomeAlanine-anticapsin ligase bacD related protein5e-0652.4
NC_017208:3897253:3904303390430339075213219Bacillus thuringiensis serovar chinensis CT-43 chromosome, completecarbamoyl phosphate synthase large subunit6e-0652.4
NC_016627:2723678:2733958273395827371733216Clostridium clariflavum DSM 19732 chromosome, complete genomecarbamoyl-phosphate synthase large subunit9e-0652
NC_014976:759129:7710707710707723111242Bacillus subtilis BSn5 chromosome, complete genomephosphoribosylglycinamide synthetase8e-0652
NC_016779:3660000:3668358366835836715763219Bacillus cereus F837/76 chromosome, complete genomecarbamoyl-phosphate synthase large chain1e-0551.6
NC_011773:3729500:3737285373728537405033219Bacillus cereus AH820 chromosome, complete genomecarbamoyl phosphate synthase large subunit1e-0551.6
NC_006274:3773335:3782935378293537861533219Bacillus cereus E33L, complete genomecarbamoyl-phosphate synthase large subunit1e-0551.6
NC_012472:3743473:3750526375052637537443219Bacillus cereus 03BB102, complete genomecarbamoyl-phosphate synthase, large subunit1e-0551.6
NC_008600:3724312:3733214373321437364323219Bacillus thuringiensis str. Al Hakam, complete genomecarbamoyl-phosphate synthase1e-0551.6
NC_014171:3779956:3787531378753137907493219Bacillus thuringiensis BMB171 chromosome, complete genomecarbamoyl phosphate synthase large subunit1e-0551.6
NC_005957:3716487:3724693372469337279113219Bacillus thuringiensis serovar konkukian str. 97-27, completecarbamoyl-phosphate synthase large subunit1e-0551.6
NC_004722:3855326:3864657386465738678753219Bacillus cereus ATCC 14579, complete genomecarbamoyl-phosphate synthase large subunit1e-0551.6