Pre_GI: BLASTP Hits

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Query: NC_013410:2179342:2192562 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2192562, End: 2194517, Length: 1956

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013410:1591500:1597040159704015992652226Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein1e-103377
NC_014314:1230687:1241852124185212448963045Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete4e-39163
NC_017986:1885613:1906432190643219084021971Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-23111
NC_014033:395000:4204544204544222141761Prevotella ruminicola 23 chromosome, complete genomehypothetical protein1e-21105
NC_013441:382597:4003494003494027062358Gordonia bronchialis DSM 43247, complete genomeprotein of unknown function DUF2624e-21103
NC_008699:1132790:1164146116414611663262181Nocardioides sp. JS614, complete genomeprotein of unknown function DUF1524 RloF4e-20100
NC_013757:3651646:3680152368015236818101659Geodermatophilus obscurus DSM 43160, complete genomeprotein of unknown function DUF2623e-20100
NC_008740:1459747:1482548148254814844731926Marinobacter aquaeolei VT8, complete genomeprotein of unknown function DUF1524 RloF9e-1995.9
NC_004557:691944:7094797094797115542076Clostridium tetani E88, complete genomehypothetical protein7e-1789.7
NC_011757:3486283:3495023349502334968881866Methylobacterium chloromethanicum CM4, complete genomeprotein of unknown function DUF2623e-1687.4
NC_014391:3445672:3455832345583234583692538Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein7e-1686.3
NC_007946:2894793:2903828290382829057171890Escherichia coli UTI89, complete genomehypothetical protein7e-1686.3
NC_011742:2823000:2836105283610528380541950Escherichia coli S88 chromosome, complete genomehypothetical protein7e-1686.3
NC_008563:2909945:2918794291879429206081815Escherichia coli APEC O1, complete genomehypothetical protein1e-1585.5
NC_014253:1163783:1184823118482311868322010Methanohalobium evestigatum Z-7303 chromosome, complete genomehypothetical protein3e-1584
NC_009802:352641:365367365367365972606Campylobacter concisus 13826, complete genomehypothetical protein1e-1482.4
NC_010468:4059436:4072713407271340748062094Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF2627e-1479.7
NC_014363:1902868:1908007190800719100792073Olsenella uli DSM 7084 chromosome, complete genomeprotein of unknown function DUF2628e-1479.3
NC_009253:529494:5481725481725501421971Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein3e-1377.8
NC_013165:329185:3698533698533719252073Slackia heliotrinireducens DSM 20476, complete genomehypothetical protein7e-1376.3
NC_014256:683384:7059237059237079862064Helicobacter pylori B8 chromosome, complete genomehypothetical protein9e-1375.9
NC_008529:1042220:1059981105998110624942514Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completehypothetical protein1e-1275.5
NC_011832:1399446:1411651141165114134531803Candidatus Methanosphaerula palustris E1-9c, complete genomeprotein of unknown function DUF2624e-1273.9
NC_015161:1556766:1577099157709915800292931Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein8e-1272.8
NC_007164:1434305:1439777143977714413961620Corynebacterium jeikeium K411, complete genomehypothetical protein9e-1272.8
NC_003450:747000:7583617583617607962436Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein1e-1172
NC_006958:748500:7598347598347622692436Corynebacterium glutamicum ATCC 13032, complete genomehypothetical protein1e-1172
NC_014659:1731121:1731121173112117338922772Rhodococcus equi 103S, complete genomehypothetical protein2e-1171.2
NC_017063:775337:7943957943957965452151Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein4e-1170.1
NC_011415:1472500:1487436148743614891181683Escherichia coli SE11 chromosome, complete genomehypothetical protein6e-1169.7
NC_009655:866281:8791778791778808951719Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein6e-1169.7
NC_009342:589741:5950335950335977742742Corynebacterium glutamicum R chromosome, complete genomehypothetical protein3e-0964.3
NC_009972:606393:6336616336616353671707Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genomehypothetical protein5e-0963.5
NC_013522:1538994:1549814154981415516161803Thermanaerovibrio acidaminovorans DSM 6589, complete genomeprotein of unknown function DUF2623e-0861.2
NC_008212:1386834:139606113960611396723663Haloquadratum walsbyi DSM 16790, complete genomehypothetical protein4e-0860.5
NC_015635:3860570:387786838778683878224357Microlunatus phosphovorus NM-1, complete genomehypothetical protein7e-0859.7
NC_013209:2032500:2039832203983220416731842Acetobacter pasteurianus IFO 3283-01, complete genomehypothetical protein6e-0859.7
NC_017100:2035000:2042472204247220443131842Acetobacter pasteurianus IFO 3283-03, complete genomehypothetical protein6e-0859.7
NC_017108:2032500:2039809203980920416501842Acetobacter pasteurianus IFO 3283-12, complete genomehypothetical protein6e-0859.7
NC_017111:2032500:2039827203982720416681842Acetobacter pasteurianus IFO 3283-32, complete genomehypothetical protein6e-0859.7
NC_017121:2032500:2039814203981420416551842Acetobacter pasteurianus IFO 3283-07, complete genomehypothetical protein6e-0859.7
NC_017125:2035000:2042452204245220442931842Acetobacter pasteurianus IFO 3283-22, complete genomehypothetical protein6e-0859.7
NC_017146:2035000:2042494204249420443351842Acetobacter pasteurianus IFO 3283-26, complete genomehypothetical protein6e-0859.7
NC_017150:1940000:1947578194757819494191842Acetobacter pasteurianus IFO 3283-01-42C, complete genomehypothetical protein6e-0859.7
NC_010468:4059436:4066582406658240682341653Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF2623e-0757.4
NC_002162:643446:6534836534836563982916Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomehypothetical protein6e-0756.6
NC_015577:1392390:1404933140493314069842052Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein7e-0756.2
NC_012988:2455807:2468245246824524700051761Methylobacterium extorquens DM4, complete genomehypothetical protein7e-0756.2
NC_008212:1386834:1395026139502613960331008Haloquadratum walsbyi DSM 16790, complete genomehypothetical protein9e-0755.8
NC_007969:2885249:2895675289567528975341860Psychrobacter cryohalolentis K5, complete genomeprotein of unknown function DUF2622e-0655.1
NC_014210:3671495:3679149367914936808161668Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF2624e-0653.9
NC_010617:2626000:2635004263500426374422439Kocuria rhizophila DC2201, complete genomehypothetical protein8e-0652.8
NC_017187:814940:8261428261428276171476Arcobacter butzleri ED-1, complete genomehypothetical protein8e-0652.8