Pre_GI: BLASTP Hits

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Query: NC_013410:1953293:1954181 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1954181, End: 1954543, Length: 363

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012225:2333500:234857123485712348969399Brachyspira hyodysenteriae WA1, complete genomeacetyl-CoA carboxylase biotin carboxyl carrier protein subunit6e-1062.8
NC_010506:2146444:2161899216189921636891791Shewanella woodyi ATCC 51908, complete genomeConserved carboxylase region1e-0962
NC_008260:2142311:2165432216543221690193588Alcanivorax borkumensis SK2, complete genomeurea carboxylase/allophanate hydrolase1e-0962
NC_019908:2068631:210725421072542107673420Brachyspira pilosicoli P43/6/78 chromosome, complete genomeacetyl-CoA carboxylase biotin carboxyl carrier protein subunit3e-0960.5
NC_004668:3184319:321093432109343211335402Enterococcus faecalis V583, complete genomeacetyl-CoA carboxylase3e-0960.5
NC_016627:1723104:172310417231041723502399Clostridium clariflavum DSM 19732 chromosome, complete genomebiotin carboxyl carrier protein7e-0959.3
NC_016943:4194002:422878442287844228993210Blastococcus saxobsidens DD2, complete genomepyruvate carboxylase2e-0857.8
NC_009648:838000:8503588503588521241767Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeoxaloacetate decarboxylase2e-0857.8
NC_015571:722815:727096727096727530435Porphyromonas gingivalis TDC60, complete genomemethylmalonyl-CoA decarboxylase, gamma subunit2e-0857.8
NC_003454:822804:826263826263826667405Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBiotin carboxyl carrier protein of glutaconyl-COA decarboxylase2e-0857.4
NC_010102:2287934:2292299229229922940681770Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0856.6
NC_011205:839425:8543158543158560871773Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853oxaloacetate decarboxylase9e-0855.8
NC_011274:793681:8071718071718089431773Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91oxaloacetate decarboxylase8e-0855.8
NC_021171:1689518:169832816983281698540213Bacillus sp. 1NLA3E, complete genomeacetyl-CoA carboxylase biotin carboxyl carrier protein subunit7e-0855.8
NC_010617:1910388:1922977192297719247881812Kocuria rhizophila DC2201, complete genomeacyl-CoA carboxylase alpha chain7e-0855.8
NC_007626:697926:7234237234237254201998Magnetospirillum magneticum AMB-1, complete genomeAcetyl-/propionyl-coenzyme A carboxylase alpha chain9e-0855.5
NC_002570:1220180:123066312306631230875213Bacillus halodurans C-125, complete genomeacetyl-CoA carboxylase9e-0855.5
NC_014926:1483974:1498947149894715008031857Thermovibrio ammonificans HB-1 chromosome, complete genomeoxaloacetate decarboxylase alpha subunit1e-0755.5
NC_015164:3431279:345416534541653454593429Bacteroides salanitronis DSM 18170 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein1e-0755.5
NC_013642:505518:514444514444514842399Thermotoga naphthophila RKU-10, complete genomebiotin/lipoyl attachment domain-containing protein1e-0755.1
NC_006347:3735887:374080737408073741238432Bacteroides fragilis YCH46, complete genomebiotin carboxyl carrier protein2e-0754.7
NC_003228:3645426:364847036484703648901432Bacteroides fragilis NCTC 9343, complete genomeputative biotin carboxyl carrier protein2e-0754.7
NC_016776:3691453:369396736939673694398432Bacteroides fragilis 638R, complete genomeputative biotin carboxyl carrier protein2e-0754.7
NC_012125:793812:8073268073268091011776Salmonella enterica subsp. enterica serovar Paratyphi C strainoxaloacetate decarboxylase2e-0754.7
NC_016810:819489:8293858293858311601776Salmonella enterica subsp. enterica serovar Typhimurium stroxaloacetate decarboxylase subunit alpha2e-0754.7
NC_016857:819429:8293858293858311601776Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74pyruvate carboxylase subunit B2e-0754.7
NC_017046:819414:8293708293708311451776Salmonella enterica subsp. enterica serovar Typhimurium str. 798oxaloacetate decarboxylase subunit alpha2e-0754.7
NC_006905:848000:8587698587698605441776Salmonella enterica subsp. enterica serovar Choleraesuis stroxaloacetate decarboxylase2e-0754.7
NC_016856:819482:8304718304718322461776Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S2e-0754.7
NC_013791:2273389:228069122806912280903213Bacillus pseudofirmus OF4 chromosome, complete genomeacetyl-CoA carboxylase biotin carboxyl carrier protein subunit2e-0754.7
NC_016860:857500:8689598689598707341776Salmonella enterica subsp. enterica serovar Typhimurium stroxaloacetate decarboxylase2e-0754.7
NC_011080:819103:8344828344828362571776Salmonella enterica subsp. enterica serovar Newport str. SL254,oxaloacetate decarboxylase alpha subunit2e-0754.3
NC_011978:1812000:182403118240311824444414Thermotoga neapolitana DSM 4359, complete genomeBiotin/lipoyl attachment domain-containing protein2e-0754.3
NC_009922:490500:498615498615498998384Alkaliphilus oremlandii OhILAs, complete genomebiotin/lipoyl attachment domain-containing protein3e-0753.9
NC_014814:4326500:4348549434854943503481800Mycobacterium sp. Spyr1 chromosome, complete genomeacetyl/propionyl-CoA carboxylase, alpha subunit3e-0753.9
NC_016023:915178:9289319289319325333603Bacillus coagulans 36D1 chromosome, complete genomeurea carboxylase3e-0753.9
NC_008553:1858558:1877509187750918792121704Methanosaeta thermophila PT, complete genomeoxaloacetate decarboxylase alpha subunit3e-0753.9
NC_013316:1:3465234652380833432Clostridium difficile R20291, complete genomepyruvate carboxylase3e-0753.9
NC_018664:1279950:1288125128812512915533429Clostridium acidurici 9a chromosome, complete genomepyruvate carboxylase Pyc4e-0753.5
NC_015422:1:1668316683187012019Alicycliphilus denitrificans K601 chromosome, complete genomemethylcrotonoyl-CoA carboxylase4e-0753.5
NC_011294:781170:7892857892857910541770Salmonella enterica subsp. enterica serovar Enteritidis stroxaloacetate decarboxylase4e-0753.5
NC_011083:862901:8783688783688801371770Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,oxaloacetate decarboxylase alpha subunit4e-0753.5
NC_020134:1173000:119218211921821192604423Clostridium stercorarium subsp. stercorarium DSM 8532, completebiotin/lipoyl attachment domain-containing protein5e-0753.1
NC_016817:185000:2064042064042100093606Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceurea carboxylase5e-0753.1
NC_011283:2684046:2684046268404626876513606Klebsiella pneumoniae 342 chromosome, complete genomeurea carboxylase5e-0753.1
NC_013956:4490000:4505944450594445095493606Pantoea ananatis LMG 20103 chromosome, complete genomeDUR1,25e-0753.1
NC_008148:1711679:1726579172657917285371959Rubrobacter xylanophilus DSM 9941, complete genomeCarbamoyl-phosphate synthase L chain, ATP-binding protein5e-0753.1
NC_013850:2685835:2682233268223326858383606Klebsiella variicola At-22 chromosome, complete genomeurea carboxylase5e-0753.1
NC_009718:1411793:142557614255761426019444Fervidobacterium nodosum Rt17-B1, complete genomebiotin/lipoyl attachment domain-containing protein6e-0752.8
NC_010003:605961:609336609336609806471Petrotoga mobilis SJ95, complete genomebiotin/lipoyl attachment domain-containing protein6e-0752.8
NC_008786:2729635:2729635272963527316622028Verminephrobacter eiseniae EF01-2, complete genomeCarbamoyl-phosphate synthase L chain, ATP-binding6e-0752.8
NC_019942:987134:105792110579211058301381Aciduliprofundum sp. MAR08-339, complete genomeacetyl/propionyl-CoA carboxylase, alpha subunit7e-0752.4
NC_009633:587562:6028766028766063163441Alkaliphilus metalliredigens QYMF chromosome, complete genomepyruvate carboxylase8e-0752.4
NC_011149:779903:7938077938077955761770Salmonella enterica subsp. enterica serovar Agona str. SL483,oxaloacetate decarboxylase alpha subunit8e-0752.4
NC_015379:1600715:1619958161995816235873630Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Urea carboxylase (Allophanate hydrolase subunit 2)1e-0652
NC_008269:868000:8878958878958896761782Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencebiotin carboxylase1e-0651.6
NC_014614:6115:2681926819302533435Clostridium sticklandii, complete genomepyruvate carboxylase1e-0651.6
NC_014394:808734:8268268268268304523627Gallionella capsiferriformans ES-2 chromosome, complete genomeurea carboxylase2e-0651.2
NC_015458:3390674:340546834054683405689222Pusillimonas sp. T7-7 chromosome, complete genomeputative allophanate hydrolase2e-0651.2
NC_008595:312861:3349863349863383693384Mycobacterium avium 104, complete genomepyruvate carboxylase2e-0651.2
NC_002944:292974:3108253108253142083384Mycobacterium avium subsp. paratuberculosis K-10, complete genomePca2e-0651.2
NC_013850:4612812:4612812461281246145811770Klebsiella variicola At-22 chromosome, complete genomeoxaloacetate decarboxylase alpha subunit2e-0651.2
NC_019968:8397:269352693527366432Prevotella dentalis DSM 3688 chromosome 2, complete sequenceacetyl/propionyl-CoA carboxylase, alpha subunit2e-0651.2
NC_010320:819326:833187833187833585399Thermoanaerobacter sp. X514 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein2e-0651.2
NC_011757:4205794:4224935422493542284653531Methylobacterium chloromethanicum CM4, complete genomeurea carboxylase3e-0650.8
NC_013440:9146562:916723091672309167739510Haliangium ochraceum DSM 14365, complete genomebiotin/lipoyl attachment domain-containing protein2e-0650.8
NC_016604:5228500:5253847525384752558862040Mycobacterium rhodesiae NBB3 chromosome, complete genomeacetyl/propionyl-CoA carboxylase subunit alpha2e-0650.8
NC_013959:83992:8399283992876153624Sideroxydans lithotrophicus ES-1 chromosome, complete genomeurea carboxylase2e-0650.8
NC_015958:2361551:236578923657892366187399Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein3e-0650.4
NC_016947:2380500:2405204240520424072432040Mycobacterium intracellulare MOTT-02 chromosome, complete genomeacetyl/propionyl-CoA carboxylase3e-0650.4
NC_010397:2063561:2063561206356120656002040Mycobacterium abscessus chromosome Chromosome, complete sequenceProbable acetyl/propionyl carboxylase alpha subunit AccA23e-0650.4
NC_012588:211633:219475219475219984510Sulfolobus islandicus M.14.25 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein4e-0650.1
NC_010995:3197686:3197686319768632013033618Cellvibrio japonicus Ueda107, complete genomeurea amidolyase homolog4e-0650.1
NC_015555:277364:284799284799285179381Thermoanaerobacterium xylanolyticum LX-11 chromosome, completebiotin/lipoyl attachment domain-containing protein6e-0649.7
NC_015164:890955:895319895319895840522Bacteroides salanitronis DSM 18170 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein6e-0649.7
NC_020411:1333352:1343484134348413454001917Hydrogenobaculum sp. HO, complete genomeConserved carboxylase region8e-0649.3
NC_015557:1333158:1343290134329013452061917Hydrogenobaculum sp. 3684 chromosome, complete genomePyruvate carboxylase8e-0649.3
NC_011126:1345984:1353258135325813551741917Hydrogenobaculum sp. Y04AAS1, complete genomeOxaloacetate decarboxylase7e-0649.3
NC_000868:834872:853742853742854179438Pyrococcus abyssi GE5, complete genomemethylmalonyl-CoA decarboxylase gamma chain7e-0649.3
NC_011283:4767269:4767269476726947690381770Klebsiella pneumoniae 342 chromosome, complete genomeoxaloacetate decarboxylase6e-0649.3
NC_021150:201237:2012372012372030361800Azotobacter vinelandii CA6, complete genomepyruvate carboxylase subunit B9e-0648.9
NC_012560:201237:2012372012372030361800Azotobacter vinelandii DJ, complete genomepyruvate carboxylase subunit B9e-0648.9
NC_014935:1223817:1255211125521112570221812Nitratifractor saLSUginis DSM 16511 chromosome, complete genomebiotin/lipoyl attachment domain-containing protein9e-0648.9