Pre_GI: BLASTP Hits

Some Help

Query: NC_011982:206784:226174 Agrobacterium vitis S4 plasmid pTiS4, complete sequence

Start: 226174, End: 227568, Length: 1395

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007948:4646344:4660047466004746614231377Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region8e-94344
NC_015136:2282488:2324124232412423255151392Burkholderia sp. CCGE1001 chromosome 1, complete sequenceFAD-dependent pyridine nucleotide-disulfide oxidoreductase7e-89328
NC_007948:4558000:4578122457812245795131392Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region3e-87322
NC_011144:2674242:2692785269278526941431359Phenylobacterium zucineum HLK1, complete genomesarcosine oxidase, subunit alpha2e-71269
NC_015724:339500:3523083523083537681461Cupriavidus necator N-1 plasmid BB2p, complete sequenceopine oxidase subunit A1e-70267
NC_007948:4620661:4641535464153546429561422Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region1e-68261
NC_010676:2793237:2820879282087928222941416Burkholderia phytofirmans PsJN chromosome 2, complete sequenceBFD domain protein (2Fe-2S)-binding domain protein4e-68259
NC_007948:4646344:4671121467112146726051485Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region3e-66253
NC_003037:1245645:1245645124564512470211377Sinorhizobium meliloti 1021 plasmid pSymA, complete sequenceputative opine oxidase subunit2e-65250
NC_003308:1:2827328273296911419Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD-nopaline dehydrogenase6e-59228
NC_003065:27163:6167661676630941419Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencenopaline oxidase subunit A6e-59228
NC_011883:2031222:2031523203152320329111389Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,BFD domain protein (2Fe-2S)-binding domain protein2e-52207
NC_007005:2686551:2709105270910527104961392Pseudomonas syringae pv. syringae B728a, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region2e-51203
NC_005773:5684000:5705088570508857064971410Pseudomonas syringae pv. phaseolicola 1448A, complete genomepyridine nucleotide-disulphide oxidoreductase family protein2e-50200
NC_008391:2404443:2417162241716224186071446Burkholderia cepacia AMMD chromosome 2, complete sequenceBFD domain protein (2Fe-2S)-binding domain protein1e-40168
NC_012792:310443:3104433104433133972955Variovorax paradoxus S110 chromosome 2, complete genomeFAD dependent oxidoreductase2e-40167
NC_008027:5842740:5845435584543558468291395Pseudomonas entomophila L48, complete genomehydrogene cyanide synthase HcnB5e-30132
NC_020291:5409587:5420695542069554222721578Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase2e-26120
NC_021184:2936244:2946110294611029477021593Desulfotomaculum gibsoniae DSM 7213, complete genomethioredoxin reductase9e-25115
NC_007492:3954345:3994946399494639963551410Pseudomonas fluorescens PfO-1, complete genomeBFD-like (2Fe-2S)-binding region1e-24114
NC_015474:301428:3014283014283028641437Pyrococcus sp. NA2 chromosome, complete genomesarcosine oxidase, subunit alpha2e-24114
NC_003413:1666520:1667150166715016685741425Pyrococcus furiosus DSM 3638, complete genomesarcosine oxidase subunit alpha3e-24113
NC_000868:318434:3190643190643205091446Pyrococcus abyssi GE5, complete genomesarcosine oxidase, subunit alpha2e-23110
NC_000961:1532245:1532245153224515336931449Pyrococcus horikoshii OT3, complete genomeD-nopaline dehydrogenase1e-22107
NC_015737:2691246:2691246269124626928201575Clostridium sp. SY8519, complete genomeNAD-dependent dehydrogenase7e-22105
NC_015172:1075592:1106628110662811077281101Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase2e-21103
NC_020064:1854589:1855942185594218572011260Serratia marcescens FGI94, complete genomeNAD(FAD)-dependent dehydrogenase2e-1997.8
NC_013926:71186:8670186701881371437Aciduliprofundum boonei T469 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase4e-1996.7
NC_014815:4621552:4648390464839046497751386Micromonospora sp. L5 chromosome, complete genomebfd domain protein (2fe-2S)-binding domain protein3e-1893.6
NC_020829:809457:8094578094578107041248Pseudomonas denitrificans ATCC 13867, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase1e-1791.3
NC_012483:3731542:3797136379713637984281293Acidobacterium capsulatum ATCC 51196, complete genomepyridine nucleotide-disulfide oxidoreductase1e-1688.2
NC_014364:3001597:3025981302598130276391659Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase4e-1686.7
NC_003047:74986:97908979081008712964Sinorhizobium meliloti 1021, complete genomePUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN9e-1685.5
NC_020210:3341976:3351474335147433525621089Geobacillus sp. GHH01, complete genomehypothetical protein1e-1584.3
NC_015566:1941407:1942781194278119440431263Serratia sp. AS12 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase5e-1582.8
NC_000868:269923:2780912780912793141224Pyrococcus abyssi GE5, complete genomeprobable monooxygenase1e-1481.6
NC_016641:2773757:2786959278695927881821224Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein1e-1481.6
NC_013522:991649:1014925101492510160161092Thermanaerovibrio acidaminovorans DSM 6589, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase1e-1481.3
NC_014910:1912552:193251619325161932785270Alicycliphilus denitrificans BC chromosome, complete genome2e-1480.9
NC_003413:1847935:1855885185588518571261242Pyrococcus furiosus DSM 3638, complete genomeNADH oxidase6e-1479
NC_009952:2217877:2243321224332122463233003Dinoroseobacter shibae DFL 12, complete genomesarcosine oxidase subunit alpha6e-1375.9
NC_010623:1871492:1894975189497518964891515Burkholderia phymatum STM815 chromosome 2, complete sequenceFAD-dependent pyridine nucleotide-disulphide oxidoreductase4e-1273.2
NC_006624:1208464:1213039121303912142801242Thermococcus kodakarensis KOD1, complete genomeNADH oxidase9e-1272
NC_013947:4363250:4378871437887143803761506Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeBFD domain-containing protein (2Fe-2S)-binding domain-containing protein4e-1066.6
NC_015425:2528549:2543822254382225450811260Clostridium botulinum BKT015925 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase5e-0962.8
NC_002928:3781657:3786393378639337893322940Bordetella parapertussis 12822, complete genomesarcosine oxidase alpha subunit9e-0962
NC_010321:562494:5716605716605729191260Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeFAD-dependent pyridine nucleotide-disulfide oxidoreductase2e-0861.2
NC_014964:557910:5670765670765683351260Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeFAD-dependent pyridine nucleotide-disulfide oxidoreductase2e-0861.2
NC_014624:1675500:1725071172507117263151245Eubacterium limosum KIST612 chromosome, complete genomeputative NAD(FAD)-dependent dehydrogenase2e-0860.8
NC_008593:2281896:2293515229351522947741260Clostridium novyi NT, complete genomesarcosine oxidase alpha subunit3e-0860.1
NC_017243:3093393:3104177310417731054511275Brachyspira intermedia PWS/A chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase6e-0859.3
NC_014330:888366:8970908970908983641275Brachyspira pilosicoli 95/1000 chromosome, complete genomesarcosine oxidase subunit alpha9e-0858.5
NC_018604:2350054:2358873235887323601471275Brachyspira pilosicoli WesB complete genomesarcosine oxidase subunit alpha1e-0758.2
NC_010001:4128034:4150901415090141522231323Clostridium phytofermentans ISDg, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase2e-0757.8
NC_019978:2036779:2043585204358520448591275Halobacteroides halobius DSM 5150, complete genomethioredoxin reductase2e-0757.4
NC_018607:2231975:2240820224082022420941275Brachyspira pilosicoli B2904 chromosome, complete genomesarcosine oxidase subunit alpha2e-0757.4
NC_019908:2312194:2322020232202023232941275Brachyspira pilosicoli P43/6/78 chromosome, complete genomesarcosine oxidase subunit alpha3e-0757
NC_017955:3057592:3066050306605030689322883Modestobacter marinus, complete genomesarcosine oxidase subunit alpha3e-0757
NC_003910:4234000:4240547424054742435703024Colwellia psychrerythraea 34H, complete genomesarcosine oxidase, alpha subunit9e-0755.5
NC_003910:2588000:2596916259691625999393024Colwellia psychrerythraea 34H, complete genomesarcosine oxidase, alpha subunit9e-0755.5
NC_012225:2247796:2255279225527922565531275Brachyspira hyodysenteriae WA1, complete genomepyridine nucleotide-disulphide oxidoreductase1e-0655.1
NC_007952:1587500:1604122160412216071243003Burkholderia xenovorans LB400 chromosome 2, complete sequenceSarcosine oxidase, alpha subunit, heterotetrameric2e-0654.3
NC_010723:1014334:1023248102324810245011254Clostridium botulinum E3 str. Alaska E43, complete genomeNAD3e-0653.5
NC_014654:1:1944819448207281281Halanaerobium sp. 'sapolanicus' chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase4e-0653.1
NC_014624:828943:8339188339188351651248Eubacterium limosum KIST612 chromosome, complete genomeputative NAD(FAD)-dependent dehydrogenase7e-0652.4