Pre_GI: BLASTP Hits

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Query: NC_011961:304158:330806 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Start: 330806, End: 331549, Length: 744

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator1e-23109
NC_004557:2607073:262244126224412623106666Clostridium tetani E88, complete genometranscriptional regulator, gntR family1e-2099.8
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family7e-2097.8
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator8e-2097.4
NC_002754:1061851:108024710802471080885639Sulfolobus solfataricus P2, complete genomeTranscriptional regulator2e-1789.4
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family3e-1789
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator2e-1686.3
NC_017275:927814:944351944351944989639Sulfolobus islandicus HVE10/4 chromosome, complete genomeGntR family transcriptional regulator4e-1685.1
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family5e-1684.7
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator8e-1684.3
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family1e-1583.6
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator2e-1582.8
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator2e-1582.4
NC_007974:785216:805329805329806051723Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family9e-1580.5
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family1e-1480.1
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family2e-1479.7
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR2e-1479.3
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR2e-1479.3
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family1e-1377
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator1e-1376.6
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein1e-1376.6
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family2e-1376.3
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family2e-1273.2
NC_018681:2447871:245134424513442451982639Nocardia brasiliensis ATCC 700358 chromosome, complete genomeGntR family transcriptional regulator2e-1272.8
NC_014210:5683616:569274356927435693420678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family2e-1272.8
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family3e-1272
UCMB5137:3660165:366330036633003663956657Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator1e-1170.1
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family2e-1169.7
NC_014639:3584000:359051735905173591182666Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator2e-1169.3
CP002207:3584000:359051735905173591182666Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator2e-1169.3
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family5e-1168.2
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family5e-1168.2
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family7e-1167.8
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR8e-1167.4
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator1e-1067
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family1e-1067
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator2e-1066.2
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein2e-1066.2
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator2e-1066.2
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family3e-1065.9
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family6e-1064.7
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator1e-0963.9
NC_011892:77975:821108211082637528Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete2e-0963.2
NC_015057:30743:366533665337351699Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetranscriptional regulator, GntR family2e-0963.2
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-0962.8
NC_015563:2702787:271975127197512720407657Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator2e-0962.8
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family2e-0962.8
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH3e-0962.4
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH4e-0962
NC_012214:897206:915170915170915934765Erwinia pyrifoliae Ep1/96, complete genomePyruvate dehydrogenase complex repressor4e-0962
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family3e-0962
NC_010694:891967:909868909868910632765Erwinia tasmaniensis, complete genomePyruvate dehydrogenase complex repressor4e-0961.6
NC_007348:752692:758795758795759571777Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein GntR, HTH:GntR, C-terminal5e-0961.6
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein6e-0961.2
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family6e-0961.2
NC_008254:611437:6283116283116295011191Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family6e-0961.2
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator7e-0961.2
NC_009921:5609770:561622556162255616935711Frankia sp. EAN1pec, complete genometranscriptional regulator, GntR family1e-0860.5
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator1e-0860.5
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC1e-0860.5
NC_006350:1909639:191544419154441916208765Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family regulatory protein1e-0860.5
NC_009664:4423829:451763545176354518357723Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family1e-0860.1
NC_013526:65495:890168901689705690Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family1e-0860.1
NC_013971:817284:839648839648840412765Erwinia amylovora ATCC 49946 chromosome, complete genomepyruvate dehydrogenase complex repressor1e-0860.1
NC_015152:2887414:289483728948372895514678Spirochaeta sp. Buddy chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein2e-0859.7
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-0859.7
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family2e-0859.7
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator2e-0859.3
NC_014974:1076565:108378810837881084447660Thermus scotoductus SA-01 chromosome, complete genomeGntR family transcriptional regulator2e-0859.3
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator2e-0859.3
NC_008209:1385094:140394714039471404594648Roseobacter denitrificans OCh 114, complete genomeGntR-family transcription regulator, putative3e-0858.9
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein3e-0858.9
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family3e-0858.9
NC_009665:4675289:468162246816224682374753Shewanella baltica OS185 chromosome, complete genometranscriptional regulator PdhR3e-0858.9
NC_011663:4579777:458252545825254583277753Shewanella baltica OS223 chromosome, complete genometranscriptional regulator PdhR3e-0858.9
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator4e-0858.5
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator6e-0858.2
NC_004463:1369165:139094013909401391659720Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein7e-0857.8
NC_015145:92397:917359173592400666Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_014963:3175912:317591231759123176580669Terriglobus saanensis SP1PR4 chromosome, complete genomeGntR family transcriptional regulator9e-0857.4
NC_010511:6067000:610992561099256110659735Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_009328:1867971:186797118679711868669699Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeregulatory protein2e-0756.6
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family1e-0756.6
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_013411:2739989:274439727443972745095699Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family2e-0756.2
NC_014915:1880748:188433518843351885033699Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_020210:1908000:192856519285651929263699Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator2e-0756.2
NC_014206:1745203:174693817469381747636699Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator2e-0756.2
NC_018644:1263891:127174812717481272407660Alpha proteobacterium HIMB59 chromosome, complete genometranscriptional regulator, gntR family,FCD domain-containing protein2e-0755.8
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family3e-0755.8
AC_000091:1521976:152197615219761522641666Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator3e-0755.5
NC_010473:1607646:160888116088811609546666Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator3e-0755.5
NC_000913:1517051:151828615182861518951666Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator3e-0755.5
NC_012759:1409086:141034514103451411010666Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator3e-0755.5
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein3e-0755.5
NC_014841:131308:133188133188133841654Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, GntR family3e-0755.5
NC_009720:583060:586317586317586994678Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator3e-0755.5
NC_013421:57961:716997169972613915Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, GntR family5e-0755.1
NC_009659:2849000:287099328709932871691699Janthinobacterium sp. Marseille chromosome, complete genomeGntR family transcriptional regulator6e-0754.7
NC_006582:883922:909551909551910216666Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family5e-0754.7
NC_008786:1507139:153422415342241534952729Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, GntR family5e-0754.7
NC_013524:1207845:121406112140611214792732Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, GntR family8e-0754.3
NC_016513:1761830:177384217738421774597756Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeD-mannonate oxidoreductase8e-0754.3
NC_013416:1429881:143955414395541440309756Aggregatibacter actinomycetemcomitans D11S-1, complete genomeD-mannonate oxidoreductase8e-0754.3
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family9e-0753.9
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-0653.5
NC_004193:2921103:292578529257852926489705Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0653.5
NC_006087:28490:491104911049751642Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, GntR family1e-0653.5
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein1e-0653.5
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator2e-0653.1
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family2e-0653.1
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family2e-0653.1
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator2e-0652.8
NC_013131:7437831:744023174402317440941711Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, GntR family2e-0652.8
NC_008209:695269:716807716807717463657Roseobacter denitrificans OCh 114, complete genomeputative transcriptional regulator2e-0652.8
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-0652.8
NC_008314:2744553:277746027774602778158699Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, GntR-family2e-0652.8
NC_011892:352652:367122367122367793672Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetranscriptional regulator, GntR family3e-0652.4
NC_015856:268034:267125267125268093969Collimonas fungivorans Ter331 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_014258:42262:767237672377397675Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator3e-0652.4
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family3e-0652.4
NC_019791:1272850:130005613000561300721666Caldisphaera lagunensis DSM 15908 chromosome, complete genometranscriptional regulator4e-0652
NC_008254:2496622:250986125098612510598738Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family5e-0651.6
NC_014364:815346:820369820369821073705Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein5e-0651.6
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator6e-0651.2
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator7e-0650.8
NC_008258:1784637:180366018036601804325666Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-0650.8
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family8e-0650.8
NC_017328:1835108:185687918568791857601723Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yncC9e-0650.8
NC_004337:1783645:180433618043361805058723Shigella flexneri 2a str. 301, complete genomehypothetical protein9e-0650.8
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein1e-0550.4
NC_016943:1560000:1576230157623015778101581Blastococcus saxobsidens DD2, complete genomeGntR family transcriptional regulator1e-0550.4