Pre_GI: BLASTP Hits

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Query: NC_011147:2247460:2250802 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2250802, End: 2251011, Length: 210

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2251022:225561822556182255899282Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane proton/cation antiporter2e-25114
NC_011080:610428:623427623427623684258Salmonella enterica subsp. enterica serovar Newport str. SL254,cation efflux system protein CusA3e-1787
NC_003198:598000:610695610695610835141Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-1268.9
NC_004631:2366335:237026623702662370406141Salmonella enterica subsp. enterica serovar Typhi Ty2, complete9e-1268.9
NC_011149:588895:601865601865602080216Salmonella enterica subsp. enterica serovar Agona str. SL483,cation efflux system protein CusA3e-1167.4
NC_015663:2090442:2118124211812421212733150Enterobacter aerogenes KCTC 2190 chromosome, complete genomecation efflux system protein CusA2e-1167.4
NC_011094:688626:701942701942702157216Salmonella enterica subsp. enterica serovar Schwarzengrund strcation efflux system protein CusA5e-1166.6
NC_009778:4188000:4206746420674642098923147Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1065.5
NC_010170:4800000:4834829483482948379963168Bordetella petrii, complete genomeAcrB/AcrD/AcrF family protein3e-1063.9
NC_009512:27783:2462824628277863159Pseudomonas putida F1, complete genomeheavy metal efflux pump, CzcA family7e-1062.8
NC_009138:519965:5362255362255392873063Herminiimonas arsenicoxydans, complete genomeouter membrane copper (silver) and drug transport protein (RND family) 46e-1062.8
NC_009659:1923925:1945984194598419491363153Janthinobacterium sp. Marseille chromosome, complete genomesilver efflux pump6e-1062.8
NC_009138:1544835:1544835154483515478072973Herminiimonas arsenicoxydans, complete genomeouter membrane copper (silver) and drug transport protein (RND family)6e-1062.8
NC_009659:1050532:1054388105438810575403153Janthinobacterium sp. Marseille chromosome, complete genomeCzcA family heavy metal efflux protein6e-1062.8
NC_015733:5909821:5950852595085259540103159Pseudomonas putida S16 chromosome, complete genomeCzcA family heavy metal efflux protein8e-1062.4
NC_002947:6123608:6140255614025561434133159Pseudomonas putida KT2440, complete genomeheavy metal RND efflux transporter, CzcA family8e-1062.4
NC_008782:1308007:1308007130800713111263120Acidovorax sp. JS42, complete genomeheavy metal efflux pump, CzcA family1e-0962
NC_010087:376918:3927223927223959283207Burkholderia multivorans ATCC 17616 chromosome 3, completeheavy metal efflux pump, CzcA family4e-0960.1
NC_016832:2363136:236706723670672367192126Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cation efflux system protein cusA1e-0858.9
NC_012968:1594954:1628234162823416313593126Methylotenera mobilis JLW8, complete genomeheavy metal efflux pump, CzcA family9e-0958.9
NC_015726:2177783:2177783217778321809533171Cupriavidus necator N-1 chromosome 1, complete sequencecobalt-zinc-cadmium resistance efflux pump CzcB1e-0858.5
NC_009439:2427120:2445697244569724488463150Pseudomonas mendocina ymp, complete genomeCzcA family heavy metal efflux protein2e-0857.8
NC_018080:3088866:3116717311671731198663150Pseudomonas aeruginosa DK2 chromosome, complete genomeCzcA family heavy metal efflux protein2e-0857.8
NC_013446:2820000:2853720285372028568903171Comamonas testosteroni CNB-2, complete genomeheavy metal efflux pump, CzcA family4e-0857
NC_008800:3955284:3956810395681039599413132Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative cation efflux system protein1e-0755.5
NC_015224:3820338:383778238377823838216435Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Heavy metal efflux pump, CzcA family2e-0754.7
NC_011757:1121262:1122512112251211256853174Methylobacterium chloromethanicum CM4, complete genomeheavy metal efflux pump, CzcA family6e-0649.7
NC_012988:1162838:1162838116283811660113174Methylobacterium extorquens DM4, complete genomeouter membrane copper/drug transport protein6e-0649.7
NC_016616:1091606:1107711110771111108453135Dechlorosoma suillum PS chromosome, complete genomeheavy metal efflux pump6e-0649.7
NC_014836:33278:3596335963390913129Desulfurispirillum indicum S5 chromosome, complete genomeheavy metal efflux pump, CzcA family7e-0649.3
NC_016602:173314:1912011912011943203120Vibrio furnissii NCTC 11218 chromosome 1, complete sequencecation efflux system transmembrane protein7e-0649.3
NC_015422:2858228:2868832286883228720113180Alicycliphilus denitrificans K601 chromosome, complete genomeCzcA family heavy metal efflux pump7e-0649.3
NC_011992:2279752:2320634232063423237653132Acidovorax ebreus TPSY, complete genomeheavy metal efflux pump, CzcA family7e-0649.3
NC_015422:3513689:3524618352461835277493132Alicycliphilus denitrificans K601 chromosome, complete genomeCzcA family heavy metal efflux pump7e-0649.3
NC_008782:2857899:2866988286698828701673180Acidovorax sp. JS42, complete genomeheavy metal efflux pump, CzcA family7e-0649.3
NC_016616:2768053:2785081278508127882153135Dechlorosoma suillum PS chromosome, complete genomeheavy metal efflux pump7e-0649.3