Pre_GI: BLASTP Hits

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Query: NC_011094:3853036:3860132 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 3860132, End: 3860911, Length: 780

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:3905782:391287839128783913657780Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-149528
NC_006905:3913988:391808839180883918867780Salmonella enterica subsp. enterica serovar Choleraesuis strunknown protein from prophage CP-933H1e-149528
NC_011415:2277559:229208422920842292890807Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-140498
NC_009801:2193000:220565922056592206465807Escherichia coli E24377A, complete genomehypothetical protein2e-140498
NC_008563:2909945:291702929170292917802774Escherichia coli APEC O1, complete genomehypothetical protein3e-138491
NC_007946:2894793:290200329020032902776774Escherichia coli UTI89, complete genomeprophage CP-933H unknown protein3e-138491
NC_011742:2823000:283434028343402835146807Escherichia coli S88 chromosome, complete genomehypothetical protein1e-138491
NC_011750:2928990:293641329364132937237825Escherichia coli IAI39 chromosome, complete genomehypothetical protein9e-131466
NC_002655:301940:307504307504308277774Escherichia coli O157:H7 EDL933, complete genomeunknown protein from prophage CP-933H1e-129462
NC_002695:301939:307503307503308276774Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-129462
NC_011353:305820:311384311384312157774Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-129462
NC_013008:306953:311384311384312157774Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-129462
NC_012796:3600630:363552436355243636276753Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-62239
NC_010994:859500:864205864205864981777Rhizobium etli CIAT 652, complete genome6e-30130
NC_013890:53538:819408194082656717Dehalococcoides sp. GT chromosome, complete genomehypothetical protein2e-29129
NC_014376:2964731:2997109299710929981941086Clostridium saccharolyticum WM1 chromosome, complete genomehypothetical protein4e-27121
NC_015144:47783:684546845469245792Weeksella virosa DSM 16922 chromosome, complete genomeexcinuclease ABC C subunit domain protein1e-25116
NC_013890:191616:196977196977197609633Dehalococcoides sp. GT chromosome, complete genomehypothetical protein7e-25114
NC_017047:2957957:297203329720332972773741Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-1376.6
NC_015061:2927707:294178329417832942523741Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-1376.6
NC_016928:16869:356583565836521864Staphylococcus aureus subsp. aureus M013 chromosome, completehypothetical protein5e-1168.2