Pre_GI: BLASTP Hits

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Query: NC_011094:1282385:1295746 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1295746, End: 1295910, Length: 165

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1771432:178472717847271784933207Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-21101
NC_004631:1182883:119619911961991196405207Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-21101
NC_016832:1182496:119521311952131195377165Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transposase2e-21101
NC_010498:301000:315387315387316133747Escherichia coli SMS-3-5, complete genomeIS911 transposase orfB8e-1475.9
NC_011750:1565000:158410915841091584549441Escherichia coli IAI39 chromosome, complete genometransposase ORF B (fragment), IS3 family9e-1475.5
NC_011750:1094000:109424910942491094689441Escherichia coli IAI39 chromosome, complete genometransposase ORF B (fragment), IS3 family9e-1475.5
NC_020181:1653261:166987216698721670036165Enterobacter aerogenes EA1509E, complete genomeTransposase6e-1372.8
AP010958:3669500:371558637155863716332747Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS602 transposase OrfB1e-1271.6
NC_011748:2973968:299215629921562992902747Escherichia coli 55989, complete genome1e-1271.6
NC_010488:48868:677876778768533747Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceintegrase core subunit1e-1271.6
CU928145:2973968:299215629921562992902747Escherichia coli 55989 chromosome, complete genomefragment of transposase ORF B, IS3 family (partial)1e-1271.6
NC_013353:3669500:371558637155863716332747Escherichia coli O103:H2 str. 12009, complete genomeIS602 transposase OrfB1e-1271.6
NC_013364:3701895:375732137573213758067747Escherichia coli O111:H- str. 11128, complete genomeputative IS602 transposase OrfB1e-1271.6
NC_010067:2529750:254182925418292542269441Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1271.2
NC_011415:1472500:149118014911801491833654Escherichia coli SE11 chromosome, complete genometransposase2e-1270.9
NC_013941:1613595:1617153161715316181991047Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeIS911 transposase orfB6e-1269.3
NC_010498:1094000:111558611155861116332747Escherichia coli SMS-3-5, complete genomeIS911 transposase orfB8e-1268.9
NC_013941:4470932:447284444728444473497654Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase1e-1168.6
NC_020063:4127161:413268541326854133437753Enterobacteriaceae bacterium strain FGI 57, complete genometransposase5e-1166.2