Pre_GI: BLASTP Hits

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Query: NC_011092:9974:18237 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 18237, End: 20444, Length: 2208

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world.This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006513:2708213:2716488271648827189502463Azoarcus sp. EbN1, complete genomehypothetical protein0715
NC_015680:21500:2998029980319111932Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein2e-35151
NC_007907:808893:8140608140608167232664Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-31136
NC_015958:1465631:1494003149400314957541752Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeATPase5e-28126
NC_014152:421481:4447174447174467562040Thermincola sp. JR, complete genomeATPase associated with various cellular activities AAA_52e-27124
NC_020210:1275031:1275031127503112767101680Geobacillus sp. GHH01, complete genomehypothetical protein1e-26122
NC_014206:2266000:2283940228394022856191680Geobacillus sp. C56-T3 chromosome, complete genomeATPase AAA2e-26121
NC_006510:1400000:1400171140017114018501680Geobacillus kaustophilus HTA426, complete genomehypothetical protein4e-26120
NC_016593:1466226:1474111147411114757901680Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete5-methylcytosine-specific restriction enzyme4e-26120
NC_013406:1217385:1248785124878512510072223Paenibacillus sp. Y412MC10 chromosome, complete genomeATPase4e-26120
NC_014915:1331459:1333542133354213352211680Geobacillus sp. Y412MC52 chromosome, complete genomeATPase associated with various cellular activities AAA_56e-26120
NC_013411:2191514:2193597219359721952761680Geobacillus sp. Y412MC61, complete genomeATPase associated with various cellular activities AAA_56e-26120
NC_015160:1467445:1487840148784014895911752Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative restriction enzyme related protein1e-24115
NC_007503:1534162:1541898154189815436071710Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-24114
NC_014209:1392115:1392115139211513938661752Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,ATPase associated with various cellular activities AAA_52e-24114
NC_017098:986428:1006003100600310078201818Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein3e-24114
NC_012440:1249941:1263636126363612659812346Persephonella marina EX-H1, complete genomehypothetical protein4e-24113
NC_015977:3215770:3228792322879232309722181Roseburia hominis A2-183 chromosome, complete genomeATPase5e-24113
NC_015311:1101761:1112932111293211146831752Prevotella denticola F0289 chromosome, complete genomehypothetical protein1e-23112
NC_019896:2805098:2813625281362528148811257Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completePutative GTPase subunit of restriction endonuclease2e-23111
NC_007512:944941:9581049581049599241821Pelodictyon luteolum DSM 273, complete genomehypothetical protein1e-22108
NC_009659:3815966:3823708382370838253331626Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-22108
NC_016023:1839503:1847540184754018495672028Bacillus coagulans 36D1 chromosome, complete genomeATPase6e-22106
NC_015682:1074263:1093771109377110961672397Thermodesulfobacterium sp. OPB45 chromosome, complete genomehypothetical protein6e-22106
NC_017068:1450049:1457174145717414597442571Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein2e-21105
NC_013851:3321853:3334777333477733369632187Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein3e-21103
NC_013410:2691437:2697672269767227001192448Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein1e-20102
NC_012108:1694817:1701074170107417036442571Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein3e-1997.8
NC_013132:3704288:3710156371015637114661311Chitinophaga pinensis DSM 2588, complete genomehypothetical protein1e-1895.5
NC_017379:996500:1004179100417910063802202Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein3e-1894.4
NC_013166:1841446:1849871184987118521262256Kangiella koreensis DSM 16069, complete genomehypothetical protein5e-1893.6
NC_008025:1588348:1593014159301415951642151Deinococcus geothermalis DSM 11300, complete genomeATPase associated with various cellular activities, AAA_58e-1892.8
NC_000915:453958:4687774687774703331557Helicobacter pylori 26695, complete genomehypothetical protein9e-1892.8
NC_017355:997089:1005641100564110066841044Helicobacter pylori v225d chromosome, complete genomehypothetical protein2e-1791.3
NC_017378:986611:9942389942389964482211Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein3e-1791.3
NC_005085:1:80928092101042013Chromobacterium violaceum ATCC 12472, complete genomeprobable site-specific DNA-methyltransferase, cytosine-specific3e-1790.9
NC_012973:967380:9750349750349761221089Helicobacter pylori B38 chromosome, complete genome5e-1790.1
NC_015677:1:1220712207150232817Ramlibacter tataouinensis TTB310 chromosome, complete genome5-methylcytosine-specific restriction enzyme B1e-1688.6
NC_009338:5537473:5548514554851455496291116Mycobacterium gilvum PYR-GCK chromosome, complete genomeATPase AAA1e-1585.5
NC_011770:2499432:2506736250673625088982163Pseudomonas aeruginosa LESB58, complete genomeGTPase subunit of restriction endonuclease-like2e-1584.7
NC_017195:3919000:3935181393518139372022022Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein2e-1584.7
NC_013790:85889:8768487684904522769Methanobrevibacter ruminantium M1 chromosome, complete genomehypothetical protein2e-1481.6
NC_010002:4572573:4584629458462945872712643Delftia acidovorans SPH-1, complete genomeChromosome segregation ATPase-like protein2e-1275.1
NC_010170:4463000:4509133450913345117692637Bordetella petrii, complete genomehypothetical protein2e-1275.1
NC_004603:2235142:2251354225135422538612508Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein2e-1068.6
NC_015740:2614317:2622730262273026252372508Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein4e-0963.9
NC_014151:3663295:3670100367010036722892190Cellulomonas flavigena DSM 20109 chromosome, complete genomeATPase associated with various cellular activities AAA_51e-0759.3
NC_006138:2683545:2720198272019827228042607Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-0758.5