Pre_GI: BLASTP Hits

Some Help

Query: NC_010660:86445:101065 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 101065, End: 101994, Length: 930

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014561:153143:161048161048162019972Pantoea vagans C9-1 plasmid pPag1, complete sequenceChromosome-partitioning protein parB4e-60231
NC_009378:106193:127272127272128243972Yersinia pestis Pestoides F plasmid MT, complete sequencepartitioning protein B3e-58225
NC_004838:51013:630386303864009972Yersinia pestis KIM plasmid pMT-1, complete sequencepartitioning protein3e-58225
NC_008120:62000:867358673587706972Yersinia pestis Antiqua plasmid pMT, complete sequencepartitioning protein B3e-58225
NC_005815:61148:927139271393684972Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative partitioning protein B3e-58225
NC_010158:92819:104832104832105803972Yersinia pestis Angola plasmid pMT-pPCP, complete sequence3e-58225
NC_003134:64672:679886798868959972Yersinia pestis CO92 plasmid pMT1, complete sequencepartitioning protein B3e-58225
NC_008118:56777:911809118092151972Yersinia pestis Nepal516 plasmid pMT, complete sequencepartitioning protein B3e-58225
NC_014839:253961:253961253961254950990Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceparB-like partition protein1e-57223
NC_014841:41773:539965399654979984Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceparB-like partition protein2e-57222
NC_014305:97055:101670101670102647978Erwinia billingiae Eb661 plasmid pEB170, complete sequencePlasmid partitioning protein B4e-53208
NC_013956:4627890:463679846367984637769972Pantoea ananatis LMG 20103 chromosome, complete genomeParB6e-51201
NC_015963:117178:144460144460145440981Enterobacter asburiae LF7a plasmid pENTAS01, complete sequenceparB-like partition protein2e-1377
NC_006905:1342474:1350920135092013519901071Salmonella enterica subsp. enterica serovar Choleraesuis strSopB protein2e-1170.1
NC_009425:63709:804748047481442969Enterobacter sp. 638 plasmid pENTE01, complete sequenceplasmid-partitioning protein6e-1168.6
NC_009649:94871:113605113605114576972Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,plasmid-partitioning protein1e-1067.8
NC_006856:95830:114503114503115474972Salmonella enterica subsp. enterica serovar Choleraesuis strSopB1e-1067.4
NC_011747:11532:295562955630527972Escherichia coli S88 plasmid pECOS88, complete sequenceplasmid-partitioning protein2e-1067
NC_010488:48868:536645366454635972Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceplasmid partition protein SopB2e-1067