Pre_GI: BLASTP Hits

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Query: NC_010001:851671:855418 Clostridium phytofermentans ISDg, complete genome

Start: 855418, End: 856191, Length: 774

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014410:989698:989698989698990465768Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, GntR family1e-25116
NC_019970:929666:929666929666930433768Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional regulator3e-25115
NC_003305:1:126631266313373711Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family2e-22106
NC_003063:2059311:206138320613832062171789Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-22105
NC_013411:2739989:274439727443972745095699Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family2e-21102
NC_014915:1880748:188433518843351885033699Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family2e-21102
NC_020210:1908000:192856519285651929263699Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator2e-21102
NC_014206:1745203:174693817469381747636699Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator2e-21102
NC_011283:2836000:291203329120332912719687Klebsiella pneumoniae 342 chromosome, complete genomeGntR family transcriptional regulator1e-20100
NC_013850:2846069:287440328744032875089687Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, GntR family2e-2099.4
NC_016514:2079975:207997520799752080661687Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YdfH2e-2099.4
NC_000913:1625500:162637616263761627062687Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator2e-2099.4
CU928160:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-2099.4
NC_010473:1712984:171600117160011716687687Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator2e-2099.4
AC_000091:1627049:163006616300661630752687Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-2099.4
NC_008563:1651270:167156316715631672249687Escherichia coli APEC O1, complete genomehypothetical protein2e-2099.4
CP002185:1727493:174728917472891747975687Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator2e-2099.4
NC_011415:1715644:173544017354401736126687Escherichia coli SE11 chromosome, complete genomeputative transcriptional repressor2e-2099.4
NC_011741:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-2099.4
NC_012759:1517500:151843515184351519121687Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-2099.4
NC_012947:2189533:220404922040492204735687Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeGntR family transcriptional regulator2e-2099.4
NC_012967:1593101:159611815961181596804687Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding transcriptional regulator2e-2099.4
NC_014119:977136:993862993862994566705Burkholderia sp. CCGE1002 chromosome chromosome 3, completetranscriptional regulator, GntR family5e-2098.2
NC_014334:37040:521305213052822693Lactobacillus casei str. Zhang chromosome, complete genometranscriptional regulator7e-2097.8
NC_009328:1867971:186797118679711868669699Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeregulatory protein8e-2097.4
NC_014618:2423661:244155524415552442241687Enterobacter cloacae SCF1 chromosome, complete genomeGntR family transcriptional regulator2e-1995.9
NC_020207:1795993:181376518137651814427663Enterococcus faecium NRRL B-2354, complete genomeregulatory protein, GntR Bacterial regulatory protein, GntR2e-1892.8
NC_014650:2097900:211502621150262115742717Geobacillus sp. Y4.1MC1 chromosome, complete genomeGntR family transcriptional regulator8e-1890.9
NC_014166:1008266:102271110227111023400690Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeGntR family transcriptional regulator8e-1580.9
NC_010505:3376322:339823433982343399088855Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, GntR family8e-1580.9
NC_013740:2218215:222773122277312228360630Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, GntR family9e-1580.5
NC_015389:616430:654375654375655133759Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family1e-1273.9
NC_003911:1791878:184090118409011841641741Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, GntR family2e-1272.8
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family3e-1272.4
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein1e-1170.5
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family1e-1170.1
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator7e-1167.8
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator1e-1067.4
NC_014258:42262:767237672377397675Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator1e-1067
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family2e-1066.6
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein2e-1066.6
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-1066.6
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family2e-1066.2
NC_020911:18500:339013390134626726Octadecabacter antarcticus 307, complete genomeputative GntR family transcriptional regulator5e-1065.1
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein6e-1064.7
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family8e-1064.3
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator9e-1063.9
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family2e-0963.2
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator2e-0962.8
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family3e-0962.4
NC_016642:1913432:193922219392221939881660Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator4e-0962
NC_014639:1:256072560726266660Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein7e-0961.2
CP002207:1:256072560726266660Bacillus atrophaeus 1942, complete genomehypothetical protein7e-0961.2
NC_010002:2293670:231700023170002317677678Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family8e-0960.8
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC9e-0960.8
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator2e-0860.1
NC_014098:2332938:234278423427842343536753Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family2e-0860.1
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator2e-0859.7
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-0859.7
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator2e-0859.3
NC_015856:3536441:356124535612453561940696Collimonas fungivorans Ter331 chromosome, complete genomeregulatory protein GntR3e-0859.3
NC_014364:815346:829594829594830268675Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, GntR family3e-0858.9
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family3e-0858.9
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family4e-0858.5
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family5e-0858.2
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family7e-0857.8
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator7e-0857.8
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator9e-0857.4
NC_011004:4183993:422052942205294221239711Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, GntR family9e-0857.4
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-0757
NC_009659:2849000:287099328709932871691699Janthinobacterium sp. Marseille chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_008380:4078670:408035540803554081065711Rhizobium leguminosarum bv. viciae 3841, complete genomeputative GntR family transcriptional regulator2e-0756.2
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family3e-0755.8
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family3e-0755.8
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family4e-0755.5
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family5e-0755.1
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family5e-0754.7
NC_014974:1076565:108378810837881084447660Thermus scotoductus SA-01 chromosome, complete genomeGntR family transcriptional regulator7e-0754.7
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family9e-0754.3
NC_015379:4426827:443682144368214437543723Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, GntR family1e-0653.9
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family1e-0653.5
NC_014217:2987450:299724129972412997927687Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, GntR family1e-0653.5
NC_006350:1909639:191544419154441916208765Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family regulatory protein2e-0653.1
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator2e-0653.1
NC_014098:2971011:297882229788222979547726Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family2e-0653.1
CP002207:3584000:359051735905173591182666Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator2e-0653.1
NC_014639:3584000:359051735905173591182666Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator2e-0653.1
NC_015145:92397:917359173592400666Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-0652.8
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
UCMB5137:3660165:366330036633003663956657Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator3e-0652.4
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator4e-0652
NC_012587:3177583:317681031768103177586777Rhizobium sp. NGR234, complete genomeputative transcriptional regulator, GntR family6e-0651.6
NC_010511:6067000:610992561099256110659735Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator7e-0651.2
NC_016582:10015558:100189221001892210019551630Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator7e-0651.2
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family8e-0650.8
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family1e-0550.8