Pre_GI: BLASTP Hits

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Query: NC_010001:1884500:1898594 Clostridium phytofermentans ISDg, complete genome

Start: 1898594, End: 1899421, Length: 828

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011898:1218500:125783612578361258660825Clostridium cellulolyticum H10, complete genometranscriptional regulator, AraC family5e-41168
NC_012914:5225609:522799552279955228879885Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-1273.2
NC_015690:1542061:156474015647401565588849Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator2e-1170.1
NC_016935:2069562:209206820920682092916849Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator2e-1169.7
NC_020291:5778999:578086057808605781627768Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeTwo component transcriptional regulator, AraC family4e-1168.6
NC_003366:461602:477962477962478819858Clostridium perfringens str. 13, complete genomeprobable transcriptional regulator9e-1167.8
NC_019978:2532640:253574925357492536591843Halobacteroides halobius DSM 5150, complete genomeDNA-binding domain-containing protein, AraC-type8e-1167.8
NC_008596:4043213:407143340714334072320888Mycobacterium smegmatis str. MC2 155, complete genomeMmsAB operon regulatory protein8e-1167.8
NC_012914:2360989:2375383237538323769751593Paenibacillus sp. JDR-2, complete genometwo component transcriptional regulator, AraC family8e-1167.8
NC_014008:669170:679249679249680019771Coraliomargarita akajimensis DSM 45221 chromosome, complete genometranscriptional regulator, AraC family8e-1167.8
NC_013406:4478000:449808544980854498942858Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator2e-1066.6
NC_014622:5553628:557234955723495573242894Paenibacillus polymyxa SC2 chromosome, complete genomeAraC family transcriptional regulator3e-1066.2
NC_019897:1577015:161353316135331614366834Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator5e-1065.1
NC_007644:2205599:2207418220741822090641647Moorella thermoacetica ATCC 39073, complete genometwo component transcriptional regulator, AraC family1e-0963.9
NC_011830:1923158:193510919351091935930822Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, AraC family1e-0963.9
NC_015732:3105649:310866331086633109505843Spirochaeta caldaria DSM 7334 chromosome, complete genomeAraC family transcriptional regulator1e-0963.9
NC_014311:1888686:190829219082921909203912Ralstonia solanacearum PSI07 chromosome, complete genomearaC-type DNA-binding transcriptional regulator2e-0963.2
NC_014538:985339:9853399853399869311593Thermoanaerobacter sp. X513 chromosome, complete genomeAraC family two component transcriptional regulator3e-0962.8
NC_012925:140000:153519153519154355837Streptococcus suis P1/7, complete genomeAraC-family regulatory protein3e-0962.8
NC_010320:1949852:1967413196741319690051593Thermoanaerobacter sp. X514 chromosome, complete genomeresponse regulator receiver protein3e-0962.8
NC_012924:142500:153324153324154160837Streptococcus suis SC84, complete genomeAraC family transcriptional regulator3e-0962.8
NC_012926:140000:153303153303154139837Streptococcus suis BM407 chromosome, complete genomeAraC family transcriptional regulator3e-0962.8
NC_009442:142500:153327153327154175849Streptococcus suis 05ZYH33 chromosome, complete genometranscriptional regulator3e-0962.8
NC_009443:142500:153231153231154079849Streptococcus suis 98HAH33, complete genometranscriptional regulator3e-0962.8
NC_012004:1053682:1068444106844410696071164Streptococcus uberis 0140J, complete genomeAraC family regulatory protein7e-0961.2
NC_013892:3745749:376796637679663768943978Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-0860.1
NC_010995:1648897:1664476166447616654831008Cellvibrio japonicus Ueda107, complete genometranscriptional regulator, AraC family2e-0859.7
NC_014479:3510972:351580535158053516671867Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeAraC family transcriptional regulator2e-0859.7
NC_012914:569471:603552603552604445894Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-0859.7
NC_014923:79370:825898258983569981Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehelix-turn-helix- domain containing protein AraC type2e-0859.7
NC_004129:3452885:348470734847073485513807Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family2e-0859.7
NC_015856:1:201942019421126933Collimonas fungivorans Ter331 chromosome, complete genomeAraC family transcriptional regulator3e-0859.3
NC_014655:2533929:253392925339292534795867Leadbetterella byssophila DSM 17132 chromosome, complete genometranscriptional regulator, arac family3e-0859.3
NC_015733:2194676:220721222072122208114903Pseudomonas putida S16 chromosome, complete genomeAraC family transcriptional regulator3e-0859.3
NC_008573:195317:224184224184225119936Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, AraC family3e-0859.3
NC_015563:4206112:422286042228604223852993Delftia sp. Cs1-4 chromosome, complete genomeAraC family transcriptional regulator4e-0858.9
NC_016609:4331359:433606443360644336966903Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator5e-0858.5
NC_014366:1663034:1664567166456716656041038Gamma proteobacterium HdN1, complete genometranscriptional regulator, AraC family5e-0858.5
NC_014624:2668157:271610827161082716983876Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator5e-0858.5
NC_003485:1707653:1709595170959517108001206Streptococcus pyogenes MGAS8232, complete genomeputative transcriptional regulator6e-0858.2
NC_012491:6143928:6150289615028961514821194Brevibacillus brevis NBRC 100599, complete genomeprobable two-component response regulator6e-0858.2
NC_009921:5681677:569145556914555692393939Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family9e-0857.8
NC_012997:2941627:2955731295573129567531023Teredinibacter turnerae T7901, complete genometranscriptional regulator, AraC family9e-0857.8
NC_014624:1840209:1866679186667918680071329Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator9e-0857.8
NC_010610:2013659:202098620209862021822837Lactobacillus fermentum IFO 3956, complete genometranscriptional regulator8e-0857.8
NC_015566:1206500:1238715123871512397521038Serratia sp. AS12 chromosome, complete genomeAraC family transcriptional regulator8e-0857.8
NC_015567:1206727:1238900123890012399371038Serratia sp. AS9 chromosome, complete genomeAraC family transcriptional regulator8e-0857.8
NC_015690:1818333:185256018525601853339780Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein1e-0757.4
NC_014363:1680578:1686932168693216879811050Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, AraC family1e-0757.4
NC_016935:2347691:238243423824342383126693Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-0757.4
NC_010338:4148667:416203941620394162932894Caulobacter sp. K31, complete genometranscriptional regulator, AraC family1e-0757.4
NC_009436:2056000:206845420684542069380927Enterobacter sp. 638, complete genomeAraC family transcriptional regulator1e-0757.4
NC_010501:3448389:346606534660653466964900Pseudomonas putida W619, complete genometranscriptional regulator, AraC family1e-0757
NC_013730:4502965:452028045202804521137858Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family1e-0757
NC_011026:1181940:119056611905661191558993Chloroherpeton thalassium ATCC 35110, complete genometranscriptional regulator, AraC family2e-0756.6
NC_013132:3877500:390580239058023906800999Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family2e-0756.6
NC_014323:3895376:389653238965323897413882Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein2e-0756.6
NC_003228:1045207:106206210620621062958897Bacteroides fragilis NCTC 9343, complete genomeputative AraC transcriptional regulatory protein2e-0756.6
NC_015277:2096266:210040521004052101220816Sphingobacterium sp. 21 chromosome, complete genometranscriptional regulator, AraC family2e-0756.6
NC_015690:1726000:174320517432051743519315Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_016935:2256000:227323622732362273550315Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_005773:5310339:532689853268985327734837Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, AraC family3e-0756.2
NC_011898:3973627:399000039900003990797798Clostridium cellulolyticum H10, complete genometranscriptional regulator, AraC family2e-0756.2
NC_010681:121647:1292811292811303451065Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, AraC family2e-0756.2
NC_016627:1485799:152182415218241522717894Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA-binding domain-containing protein2e-0756.2
NC_021184:3149000:316585831658583166829972Desulfotomaculum gibsoniae DSM 7213, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain2e-0756.2
NC_010501:3013103:302473330247333025197465Pseudomonas putida W619, complete genometranscriptional regulator, AraC family3e-0755.8
NC_017986:5605197:563115756311575632029873Pseudomonas putida ND6 chromosome, complete genomeHelix-turn-helix domain-containing protein3e-0755.8
NC_015520:2821406:2821406282140628230011596Mahella australiensis 50-1 BON chromosome, complete genomeAraC family two component transcriptional regulator3e-0755.8
NC_007645:829500:8408168408168418501035Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain4e-0755.5
NC_015690:1726000:174660117466011747449849Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_016935:2256000:227664522766452277493849Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_015275:309133:3217793217793240432265Clostridium lentocellum DSM 5427 chromosome, complete genometranscriptional regulator, AraC family4e-0755.5
NC_016935:4813916:482749948274994828329831Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_016613:2759908:278571527857152786443729Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein5e-0755.1
NC_019897:3251639:3253455325345532550831629Thermobacillus composti KWC4 chromosome, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain5e-0755.1
NC_015312:848403:857726857726858697972Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator5e-0755.1
NC_016641:2735054:274343427434342744315882Paenibacillus terrae HPL-003 chromosome, complete genomeAraC family transcriptional regulator5e-0755.1
NC_013204:1759985:1771263177126317723001038Eggerthella lenta DSM 2243, complete genometranscriptional regulator, AraC family7e-0754.7
NC_016935:2347691:238530323853032386121819Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_015732:684000:6900326900326933733342Spirochaeta caldaria DSM 7334 chromosome, complete genomeAraC family transcriptional regulator7e-0754.7
NC_009953:2388605:240436324043632405148786Salinispora arenicola CNS-205 chromosome, complete genomeAraC family transcriptional regulator9e-0754.3
NC_019897:1577015:1618360161836016198861527Thermobacillus composti KWC4 chromosome, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain9e-0754.3
NC_014828:1905479:191609019160901916923834Ethanoligenens harbinense YUAN-3 chromosome, complete genometranscriptional regulator, AraC family9e-0754.3
NC_014632:1404000:141681214168121417717906Ilyobacter polytropus DSM 2926 chromosome, complete genomeAraC family transcriptional regulator9e-0754.3
NC_013895:1332832:134736213473621348342981Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completetranscriptional regulator, AraC family9e-0754.3
NC_016935:2256000:227476222747622275592831Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator1e-0654.3
NC_015690:1726000:174471817447181745548831Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_009012:2706755:272244827224482723380933Clostridium thermocellum ATCC 27405, complete genometranscriptional regulator, AraC family1e-0653.9
NC_016584:487613:499304499304500050747Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator1e-0653.9
NC_004668:241352:263532263532264098567Enterococcus faecalis V583, complete genomeada regulatory protein, putative1e-0653.5
NC_015690:1818333:185550318555031856324822Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator1e-0653.5
NC_014933:602312:6023126023126062323921Bacteroides helcogenes P 36-108 chromosome, complete genomehistidine kinase2e-0653.5
NC_012914:970000:9861589861589873871230Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-0653.5
NC_014023:24000:378563785638755900Bacillus megaterium QM B1551 plasmid pBM700, complete sequenceAraC-like ligand binding domain/transcriptional regulator, AraC family2e-0653.1
NC_015690:4469775:4555014455501445566061593Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYtdP22e-0653.1
NC_019970:2080419:2097771209777120988261056Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeresponse regulator containing CheY-like receiver domain and AraC-type DNA-binding domain2e-0653.1
NC_013406:3583474:3617746361774636191881443Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator2e-0652.8
NC_014624:1675500:1736220173622017374221203Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein3e-0652.8
NC_010628:675445:690930690930691910981Nostoc punctiforme PCC 73102, complete genometranscriptional regulator, AraC family3e-0652.8
NC_013406:3672857:3709192370919237107811590Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator3e-0652.8
NC_013656:2317224:232196023219602322829870Lactococcus lactis subsp. lactis KF147, complete genomeAraC family transcriptional regulator4e-0652.4
NC_015738:1707173:1713840171384017148771038Eggerthella sp. YY7918, complete genomehypothetical protein4e-0652.4
NC_016935:2347691:2352656235265623549742319Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator4e-0652.4
NC_015723:430165:445557445557446420864Cupriavidus necator N-1 chromosome 2, complete sequencetranscriptional regulator3e-0652.4
NC_015690:1818333:1822786182278618251552370Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator3e-0652.4
NC_014973:243000:247572247572248330759Geobacter sp. M18 chromosome, complete genometwo component AraC family transcriptional regulator5e-0652
NC_008525:561000:561046561046561876831Pediococcus pentosaceus ATCC 25745, complete genomeAraC-like transcriptional regulator (HTH and ligand binding domain)4e-0652
NC_003366:1122654:112669011266901127442753Clostridium perfringens str. 13, complete genometwo-component response regulator4e-0652
NC_008261:1332864:133755413375541338306753Clostridium perfringens ATCC 13124, complete genomeDNA-bindng response regulator, AraC family4e-0652
NC_009486:1737703:174171917417191742618900Thermotoga petrophila RKU-1 chromosome, complete genomeAraC-like transcriptional regulator4e-0652
NC_005125:3420270:343317934331793434066888Gloeobacter violaceus PCC 7421, complete genomeprobable transcriptional regulator4e-0652
NC_009483:3644677:366996336699633670763801Geobacter uraniireducens Rf4 chromosome, complete genomeresponse regulator receiver protein6e-0651.6
NC_011898:1218500:1234736123473612363641629Clostridium cellulolyticum H10, complete genometwo component transcriptional regulator, AraC family7e-0651.6
NC_016935:2256000:2263967226396722655561590Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein8e-0651.2
NC_015690:1726000:1733764173376417353621599Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYesN48e-0651.2
NC_013766:1202713:120444412044441205328885Listeria monocytogenes 08-5578 chromosome, complete genometranscriptional regulator PocR9e-0650.8