Pre_GI: BLASTP Hits

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Query: NC_009727:1899876:1907283 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 1907283, End: 1908521, Length: 1239

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011884:2817054:2838841283884128401001260Cyanothece sp. PCC 7425, complete genomeHydroxymethylglutaryl-coenzyme A synthase domain protein5e-108391
NC_012880:1613485:1627374162737416286361263Dickeya dadantii Ech703, complete genomeHydroxymethylglutaryl-CoA synthase3e-104379
NC_020410:1684192:1701926170192617031881263Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete3-hydroxy-3-methylglutaryl CoA synthase8e-102370
NC_005810:1467772:1479061147906114802991239Yersinia pestis biovar Microtus str. 91001, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_004088:2966331:2996238299623829974761239Yersinia pestis KIM, complete genomehydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_010465:2820500:2861462286146228627001239Yersinia pseudotuberculosis YPIII, complete genomeHydroxymethylglutaryl-coenzyme A synthase domain protein2e-59229
NC_008149:2802392:2832302283230228335401239Yersinia pestis Nepal516, complete genomehydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_003143:1630000:1650150165015016513881239Yersinia pestis CO92, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_008150:844727:8620558620558632931239Yersinia pestis Antiqua, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_006155:1756000:1769548176954817707861239Yersinia pseudotuberculosis IP 32953, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_010634:1755548:1769796176979617710341239Yersinia pseudotuberculosis PB1/+, complete genomehydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_009708:2788855:2849918284991828511561239Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_014029:1702338:1719666171966617209041239Yersinia pestis Z176003 chromosome, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_017154:1644404:1661733166173316629711239Yersinia pestis D106004 chromosome, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_017160:1628500:1642228164222816434661239Yersinia pestis D182038 chromosome, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_017168:3977767:4007683400768340089211239Yersinia pestis A1122 chromosome, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_017265:2586729:2616639261663926178771239Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative hydroxymethylglutaryl-coenzyme A synthase2e-59229
NC_009381:1682000:1713577171357717148151239Yersinia pestis Pestoides F chromosome, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase2e-58226
NC_010159:3120642:3132369313236931335621194Yersinia pestis Angola, complete genomeputative hydroxymethylglutaryl-coenzyme A synthase7e-57221
NC_016023:1143130:1152116115211611533001185Bacillus coagulans 36D1 chromosome, complete genomehydroxymethylglutaryl-CoA synthase1e-33144
NC_015954:2873402:2883611288361128849481338Halophilic archaeon DL31 chromosome, complete genomeHydroxymethylglutaryl-CoA synthase6e-23108
NC_008710:703740:7275887275887288801293Borrelia turicatae 91E135, complete genomehydroxymethylglutaryl-CoA synthase1e-1998.2
NC_020388:578500:5841585841585854951338Natronomonas moolapensis 8.8.11 complete genomehydroxymethylglutaryl-CoA synthase5e-1995.9
NC_010673:703816:7302087302087314641257Borrelia hermsii DAH, complete genomehydroxymethylglutaryl-CoA synthase1e-1894.7