Pre_GI: BLASTP Hits

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Query: NC_009664:4696961:4699553 Kineococcus radiotolerans SRS30216, complete genome

Start: 4699553, End: 4702438, Length: 2886

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009664:4423829:4660121466012146629882868Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR1e-169597
NC_009664:4423829:4655577465557746583482772Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR5e-88326
NC_009664:4423829:4671491467149146742592769Kineococcus radiotolerans SRS30216, complete genomeregulatory protein LuxR2e-75285
NC_019673:3041936:305598930559893056432444Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-1791.3
NC_003888:7866148:7881841788184178846392799Streptomyces coelicolor A3(2), complete genometranscriptional regulator1e-1586.3
NC_008596:4104476:4124109412410941268412733Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulatory protein9e-1583.2
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family5e-0860.8
NC_014355:2635500:265823626582362658943708Candidatus Nitrospira defluvii, complete genomeputative LuxR family response regulator2e-0758.9
NC_018868:1960542:201229520122952012939645Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeresponse regulator receiver domain-containing protein4e-0757.8
NC_016887:3286436:3286436328643632882921857Nocardia cyriacigeorgica GUH-2, complete genomeLuxR family transcriptional regulator (fragment)4e-0757.8
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator4e-0757.8
NC_015152:2831566:285606528560652857009945Spirochaeta sp. Buddy chromosome, complete genomeLuxR family transcriptional regulator5e-0757.4
NC_014209:1487699:150389515038951504512618Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,two component transcriptional regulator, LuxR family8e-0757
NC_009142:5647737:566777056677705668258489Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator (LuxR/UhpA family)9e-0756.6
NC_015564:2870631:2901783290178329034231641Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeregulatory protein LuxR1e-0656.2
NC_018720:993869:101953210195321020158627Bifidobacterium asteroides PRL2011 chromosome, complete genometwo component transcriptional regulator, LuxR family2e-0655.8
NC_009565:2806000:2810784281078428141973414Mycobacterium tuberculosis F11, complete genomehypothetical transcriptional regulatory protein, luxR-family1e-0655.8
NC_009525:2802987:2809435280943528128483414Mycobacterium tuberculosis H37Ra, complete genomeLuxR family transcriptional regulator1e-0655.8
NC_002945:2757821:2764268276426827676813414Mycobacterium bovis AF2122/97, complete genomeLuxR family transcriptional regulator1e-0655.8
NC_000962:2791019:2797467279746728008803414Mycobacterium tuberculosis H37Rv, complete genomePROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY)1e-0655.8
NC_008769:2754828:2761274276127427646873414Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative transcriptional regulatory protein (luxR-family)1e-0655.8
NC_012207:2747599:2754045275404527574583414Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative transcriptional regulatory protein1e-0655.8
NC_016804:2735897:2740639274063927440523414Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative transcriptional regulatory protein, LuxR family1e-0655.8
NC_002755:2788000:2792955279295527962963342Mycobacterium tuberculosis CDC1551, complete genometranscriptional regulator, LuxR family1e-0655.8
NC_019950:2830682:2837062283706228404063345Mycobacterium canettii CIPT 140060008 complete genomePutative LuxR family transcriptional regulator2e-0655.5
NC_015848:2859145:2865525286552528688693345Mycobacterium canettii CIPT 140010059, complete genomeputative transcriptional regulatory protein2e-0655.5
NC_016111:134444:1396081396081423852778Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, luxR family3e-0655.1
NC_008268:5745620:5761830576183057645022673Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, LuxR family3e-0655.1
NC_017955:1555990:1555990155599015585392550Modestobacter marinus, complete genomeRegulatory protein4e-0654.3
NC_015957:8569721:859217685921768592853678Streptomyces violaceusniger Tu 4113 chromosome, complete genomeLuxR family two component transcriptional regulator5e-0654.3
NC_007974:2323436:232588423258842326516633Ralstonia metallidurans CH34 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family6e-0653.9
NC_015589:3241364:325205832520583252759702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver8e-0653.5
NC_019673:3582004:359677535967753597140366Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-0653.1
NC_014210:2597000:261792926179292618585657Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,two component transcriptional regulator, LuxR family1e-0553.1