Pre_GI: BLASTP Hits

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Query: NC_008593:2457594:2461214 Clostridium novyi NT, complete genome

Start: 2461214, End: 2462596, Length: 1383

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2690448:2694421269442126957881368Clostridium botulinum BKT015925 chromosome, complete genomesodium-dependent symporter family protein0726
NC_009922:2800253:2800253280025328016171365Alkaliphilus oremlandii OhILAs, complete genomesodium:neurotransmitter symporter2e-86320
NC_016002:1938749:1958749195874919601371389Pseudogulbenkiania sp. NH8B, complete genomesodium:neurotransmitter symporter5e-86318
NC_009633:337706:3537863537863551411356Alkaliphilus metalliredigens QYMF chromosome, complete genomesodium:neurotransmitter symporter9e-80297
NC_002570:1220180:1223435122343512247961362Bacillus halodurans C-125, complete genomesodium-dependent transporter3e-77289
NC_013791:2273389:2273389227338922747681380Bacillus pseudofirmus OF4 chromosome, complete genomesodium-dependent transporter7e-75281
NC_009674:1707944:1726199172619917275391341Bacillus cytotoxicus NVH 391-98 chromosome, complete genomesodium:neurotransmitter symporter5e-74278
NC_009633:365325:3805383805383819531416Alkaliphilus metalliredigens QYMF chromosome, complete genomesodium:neurotransmitter symporter1e-72273
NC_009922:2800253:2802038280203828034051368Alkaliphilus oremlandii OhILAs, complete genomesodium:neurotransmitter symporter4e-71268
NC_016745:3170384:3173048317304831744181371Oceanimonas sp. GK1 chromosome, complete genomesodium:neurotransmitter symporter3e-70266
NC_007912:3466966:3468755346875534701281374Saccharophagus degradans 2-40, complete genomesodium-dependent transporter family protein2e-68259
NC_011772:1684404:1701992170199217033291338Bacillus cereus G9842, complete genomesodium-dependent transporter1e-64247
NC_011969:1816746:1819124181912418204611338Bacillus cereus Q1 chromosome, complete genomesodium-dependent serine transporter2e-64247
NC_016779:1688946:1691325169132516926621338Bacillus cereus F837/76 chromosome, complete genomesodium-dependent transporter2e-64246
NC_012997:3651993:3652433365243336537821350Teredinibacter turnerae T7901, complete genometransporter, sodium-dependent family4e-62239
NC_010519:1764261:1782919178291917842831365Haemophilus somnus 2336 chromosome, complete genomesodium:neurotransmitter symporter2e-60233
NC_007005:4992730:4997122499712249985581437Pseudomonas syringae pv. syringae B728a, complete genomeSodium:neurotransmitter symporter3e-53209
NC_018604:233769:2354362354362368241389Brachyspira pilosicoli WesB complete genomeSNF family sodium-dependent transporter8e-53208
NC_014330:1541874:1544194154419415455821389Brachyspira pilosicoli 95/1000 chromosome, complete genomeSNF family sodium-dependent transporter8e-53208
NC_018607:2578433:2592385259238525937731389Brachyspira pilosicoli B2904 chromosome, complete genomeSNF family sodium-dependent transporter8e-53208
NC_014150:1006000:1011044101104410124291386Brachyspira murdochii DSM 12563 chromosome, complete genomesodium:neurotransmitter symporter8e-51201
NC_005773:4797242:4801653480165348030561404Pseudomonas syringae pv. phaseolicola 1448A, complete genomesodium-dependent transporter, putative5e-50199
NC_014256:636000:6573046573046586321329Helicobacter pylori B8 chromosome, complete genomehypothetical protein3e-48192
NC_019908:1512622:1527989152798915293741386Brachyspira pilosicoli P43/6/78 chromosome, complete genomeSNF family sodium-dependent transporter1e-47190
NC_015276:565701:5825945825945839521359Marinomonas mediterranea MMB-1 chromosome, complete genomesodium:neurotransmitter symporter3e-46186
NC_019964:1873167:1898183189818318995531371Halovivax ruber XH-70, complete genomeSNF family Na+-dependent transporter2e-46186
NC_014297:1282302:1298143129814312994981356Halalkalicoccus jeotgali B3 chromosome, complete genomesodium-dependent transporter1e-45184
NC_012029:1654816:1657302165730216586571356Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomesodium:neurotransmitter symporter2e-45184
NC_017243:723000:7392767392767406641389Brachyspira intermedia PWS/A chromosome, complete genomeNa+-dependent transporter of the SNF family3e-45182
NC_014256:636000:6559656559656572931329Helicobacter pylori B8 chromosome, complete genomehypothetical protein7e-43175
NC_015474:1432065:1456250145625014575931344Pyrococcus sp. NA2 chromosome, complete genomeputative transporter7e-41168
NC_010723:2873886:2890620289062028921161497Clostridium botulinum E3 str. Alaska E43, complete genomesodium/proline symporter4e-39162
NC_010674:3049500:3067062306706230685581497Clostridium botulinum B str. Eklund 17B, complete genomesodium/proline symporter4e-38159
NC_012778:207415:2141232141232154931371Eubacterium eligens ATCC 27750, complete genomeneurotransmitter:Na+ symporter, NSS family1e-36154
NC_012225:2198987:2212549221254922138621314Brachyspira hyodysenteriae WA1, complete genomeNa+-dependent transporters of the SNF family2e-36153
NC_014364:1116439:1117622111762211191181497Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesodium:neurotransmitter symporter1e-35150
NC_009831:5107924:5108743510874351101011359Shewanella sediminis HAW-EB3, complete genomesodium:neurotransmitter symporter7e-35148
NC_017243:3141500:3144961314496131462831323Brachyspira intermedia PWS/A chromosome, complete genomeNa+-dependent transporter2e-34147
NC_018524:4988810:4990137499013749917561620Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeneurotransmitter symporter family protein4e-34146
NC_012704:696374:6979556979556997241770Corynebacterium kroppenstedtii DSM 44385, complete genomemethionine and alanine importer, large subunit1e-33144
NC_019897:128610:1345261345261360311506Thermobacillus composti KWC4 chromosome, complete genomeSNF family Na+-dependent transporter1e-32141
NC_007519:1782067:1816804181680418183001497Desulfovibrio alaskensis G20 chromosome, complete genomesodium/proline symporter8e-32138
NC_009633:587562:6067476067476082461500Alkaliphilus metalliredigens QYMF chromosome, complete genomesodium:neurotransmitter symporter2e-30134
NC_013416:668152:6721316721316736331503Aggregatibacter actinomycetemcomitans D11S-1, complete genomesodium-dependent transporter6e-30132
NC_016513:974402:9783899783899798911503Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completesodium-dependent transporter1e-29131
NC_013522:736339:7538737538737553511479Thermanaerovibrio acidaminovorans DSM 6589, complete genomesodium:neurotransmitter symporter6e-29129
NC_000917:1778173:1796894179689417983691476Archaeoglobus fulgidus DSM 4304, complete genomesodium- and chloride-dependent transporter1e-27124
NC_013921:2375900:2379966237996623815431578Thermoanaerobacter italicus Ab9 chromosome, complete genomesodium:neurotransmitter symporter1e-27124
NC_014209:2257316:2261384226138422629611578Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,sodium:neurotransmitter symporter7e-27122
NC_013169:805124:8070098070098086701662Kytococcus sedentarius DSM 20547, complete genomeSNF family Na+-dependent transporter5e-27122
NC_010410:11201:2576825768272461479Acinetobacter baumannii AYE, complete genomehypothetical protein1e-26121
NC_010611:3879190:3883829388382938853071479Acinetobacter baumannii ACICU, complete genomeNa+-dependent transporter of the SNF family1e-26121
NC_014218:1619982:1628072162807216296311560Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomesodium:neurotransmitter symporter2e-25117
NC_011027:303000:3243423243423258471506Chlorobaculum parvum NCIB 8327, complete genomesodium:neurotransmitter symporter3e-24113
NC_010831:40000:4281542815443471533Chlorobium phaeobacteroides BS1, complete genomesodium:neurotransmitter symporter9e-23108
NC_007681:848084:8491638491638506561494Methanosphaera stadtmanae DSM 3091, complete genomepredicted Na+-dependent transporter4e-22106
NC_000919:12545:2755727557288881332Treponema pallidum subsp. pallidum str. Nichols, complete genomesodium- and chloride- dependent transporter9e-21102
NC_010741:12542:2755427554288851332Treponema pallidum subsp. pallidum SS14, complete genomesodium- and chloride- dependent transporter9e-21102
NC_016842:1:2756527565288961332Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeNSS family amino acid:sodium (Na+) symporter9e-21102
NC_016844:12545:2756227562288931332Treponema pallidum subsp. pallidum DAL-1 chromosome, completeNSS family amino acid:sodium (Na+) symporter9e-21102
NC_016848:12548:2756527565288961332Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeNSS family amino acid:sodium (Na+) symporter9e-21102
NC_017268:1:2756327563288941332Treponema pallidum subsp. pallidum str. Chicago chromosome,sodium- and chloride- dependent transporter9e-21102
NC_021508:12543:2756027560288911332Treponema pallidum subsp. pallidum SS14, complete genomeNSS family probable amino acid:sodium (Na+) symporter9e-21102
NC_016843:1:2756527565288961332Treponema pallidum subsp. pertenue str. Gauthier chromosome,NSS family amino acid:sodium (Na+) symporter5e-21102
NC_009033:295517:3019353019353035181584Staphylothermus marinus F1, complete genomesodium:neurotransmitter symporter9e-0755.5