Pre_GI: BLASTP Hits

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Query: NC_008261:2481500:2485767 Clostridium perfringens ATCC 13124, complete genome

Start: 2485767, End: 2486924, Length: 1158

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2150944:2155036215503621561931158Clostridium perfringens SM101, complete genomeamidohydrolase, putative0727
NC_003366:2266757:2271934227193422730911158Clostridium perfringens str. 13, complete genomehypothetical protein0727
NC_008593:1797000:1820856182085618220131158Clostridium novyi NT, complete genomeAmidohydrolase family protein2e-128459
NC_016012:236012:2472942472942484511158Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeputative amidohydrolase7e-125447
NC_015425:2024154:2047594204759420487511158Clostridium botulinum BKT015925 chromosome, complete genomeamidohydrolase family protein2e-124445
NC_015555:693461:7096857096857108421158Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeamidohydrolase6e-121434
NC_014410:2149886:2155534215553421566911158Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,amidohydrolase5e-120431
NC_019970:2190695:2199350219935022005071158Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeamidohydrolase, imidazolonepropionase5e-120431
NC_009922:2672396:2675777267577726769371161Alkaliphilus oremlandii OhILAs, complete genomeamidohydrolase6e-119427
NC_014377:1897857:1917522191752219186791158Thermosediminibacter oceani DSM 16646 chromosome, complete genomeamidohydrolase4e-107388
NC_020134:2832857:2839385283938528405721188Clostridium stercorarium subsp. stercorarium DSM 8532, completeamidohydrolase6e-103374
NC_010001:232976:2329762329762341541179Clostridium phytofermentans ISDg, complete genomeamidohydrolase1e-97357
NC_014915:1909275:1941749194174919429031155Geobacillus sp. Y412MC52 chromosome, complete genomeamidohydrolase5e-94345
NC_013411:2767400:2801813280181328029671155Geobacillus sp. Y412MC61, complete genomeamidohydrolase5e-94345
NC_004193:375416:4869914869914881151125Oceanobacillus iheyensis HTE831, complete genomehypothetical protein3e-86318
NC_011653:1339868:1361905136190513630441140Thermosipho africanus TCF52B, complete genomeamidohydrolase family protein2e-83310
NC_020291:5641444:5660131566013156613031173Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeamidohydrolase1e-82306
NC_013216:3907497:3907497390749739086571161Desulfotomaculum acetoxidans DSM 771, complete genomeamidohydrolase1e-81303
NC_000961:1727638:4890489060321143Pyrococcus horikoshii OT3, complete genomehypothetical protein5e-42172
NC_013730:2490000:249455724945572495300744Spirosoma linguale DSM 74, complete genome6e-0962.4
NC_010729:1818500:1828447182844718297181272Porphyromonas gingivalis ATCC 33277, complete genomeimidazolonepropionase5e-0859.3
NC_002950:353549:3622453622453635161272Porphyromonas gingivalis W83, complete genomeimidazolonepropionase6e-0858.9
NC_015571:1495286:1500510150051015017811272Porphyromonas gingivalis TDC60, complete genomeimidazolonepropionase6e-0858.9
NC_013315:2232339:2242432224243222438561425Clostridium difficile CD196 chromosome, complete genomeamidohydrolase2e-0757.4
NC_013316:2309694:2322986232298623244101425Clostridium difficile R20291, complete genomeputative amidohydrolase2e-0757.4
NC_010723:575254:5951035951035964941392Clostridium botulinum E3 str. Alaska E43, complete genomedihydropyrimidinase9e-0755.1
NC_015318:1583839:1591328159132815925781251Hippea maritima DSM 10411 chromosome, complete genomeImidazolonepropionase9e-0755.1
NC_016593:1527456:1539176153917615405941419Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeD-hydantoinase1e-0654.7
NC_006510:1446490:1458133145813314595511419Geobacillus kaustophilus HTA426, complete genomedihydropyrimidinase1e-0654.7
NC_021182:1654903:1660030166003016612171188Clostridium pasteurianum BC1, complete genomedihydroorotase, multifunctional complex type2e-0654.3
NC_015510:1978539:1999705199970520012611557Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAmidohydrolase 32e-0653.9
NC_007929:210088:2249852249852262741290Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDihydroorotase4e-0652.8
NC_021171:1354000:1359236135923613605221287Bacillus sp. 1NLA3E, complete genomedihydroorotase4e-0652.8
NC_015510:4905345:4925080492508049285683489Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeamidohydrolase5e-0652.4
NC_013730:906389:9063899063899094063018Spirosoma linguale DSM 74, complete genomeamidohydrolase7e-0652
NC_013411:2236166:2247803224780322492211419Geobacillus sp. Y412MC61, complete genomedihydropyrimidinase8e-0652
NC_014915:1376035:1387747138774713891651419Geobacillus sp. Y412MC52 chromosome, complete genomedihydropyrimidinase8e-0652