Pre_GI: BLASTP Hits

Some Help

Query: NC_008261:1787345:1806506 Clostridium perfringens ATCC 13124, complete genome

Start: 1806506, End: 1807018, Length: 513

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014915:2963500:298966729896672990164498Geobacillus sp. Y412MC52 chromosome, complete genomephage terminase, small subunit, , P27 family1e-1995.5
NC_013411:597235:613771613771614268498Geobacillus sp. Y412MC61, complete genomephage terminase, small subunit, , P27 family1e-1995.5
NC_016935:1636278:166112516611251661625501Paenibacillus mucilaginosus 3016 chromosome, complete genomephage terminase, small subunit, , P27 family2e-1891.7
NC_014829:2915500:293037729303772930862486Bacillus cellulosilyticus DSM 2522 chromosome, complete genomephage terminase, small subunit, , P27 family3e-1684.3
NC_012563:2925472:294645329464532946938486Clostridium botulinum A2 str. Kyoto, complete genomephage terminase, small subunit, P27 family4e-1477.4
NC_009699:2017329:203342920334292033914486Clostridium botulinum F str. Langeland chromosome, complete genomeP27 family phage terminase small subunit4e-1477.4
NC_017297:2017000:203353520335352034020486Clostridium botulinum F str. 230613 chromosome, complete genomephage terminase small subunit4e-1477.4
NC_015520:3060495:308298130829813083457477Mahella australiensis 50-1 BON chromosome, complete genomephage terminase, small subunit P27 family1e-1272.4
NC_012563:1681639:170210917021091702591483Clostridium botulinum A2 str. Kyoto, complete genomephage terminase, small subunit, P27 family3e-1271.2
NC_006270:3418097:345287334528733453388516Bacillus licheniformis ATCC 14580, complete genomePhage terminase like, small subunit protein1e-1169.3
NC_006322:3418268:345304434530443453559516Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-1169.3
NC_020272:1311932:133834813383481338863516Bacillus amyloliquefaciens IT-45, complete genomePhage terminase like, small subunit protein2e-1168.6
UCMB5137:120656:132059132059132574516Bacillus atrophaeus UCMB-5137hypothetical protein8e-1166.2
NC_013929:7162030:717218471721847172663480Streptomyces scabiei 87.22 chromosome, complete genomephage terminase small subunit5e-1063.9
NC_021184:4493440:449344044934404493913474Desulfotomaculum gibsoniae DSM 7213, complete genomephage terminase, small subunit, putative, P27 family1e-0859.3
NC_010520:1614333:163717216371721637657486Clostridium botulinum A3 str. Loch Maree, complete genomephage terminase, P27 family3e-0857.8
NC_015687:2025345:204564520456452046100456Clostridium acetobutylicum DSM 1731 chromosome, complete genomePhage terminase-like protein, small subunit3e-0754.7
NC_003030:2023751:204405120440512044506456Clostridium acetobutylicum ATCC 824, complete genomePhage terminase-like protein, small subunit3e-0754.7
NC_017295:2022085:204345820434582043913456Clostridium acetobutylicum EA 2018 chromosome, complete genomephage terminase-like protein small subunit3e-0754.7
NC_011773:4141765:416284241628424163225384Bacillus cereus AH820 chromosome, complete genomeP27 family phage terminase, small subunit3e-0651.6
NC_010674:950276:953624953624954085462Clostridium botulinum B str. Eklund 17B, complete genomephage terminase, small subunit, P27 family6e-0650.1
NC_007929:785875:805701805701806153453Lactobacillus salivarius subsp. salivarius UCC118, complete genomePhage Terminase Small Subunit8e-0649.7