Pre_GI: BLASTP Hits

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Query: NC_008261:1048515:1059194 Clostridium perfringens ATCC 13124, complete genome

Start: 1059194, End: 1059847, Length: 654

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:110243611024361103089654Clostridium perfringens str. 13, complete genomeethanolamine utilization protein5e-108389
NC_017179:2067015:207746120774612078114654Clostridium difficile BI1, complete genomeethanolamine utilization protein EutL2e-92337
NC_013315:2059007:206945320694532070106654Clostridium difficile CD196 chromosome, complete genomeethanolamine/propanediol utilization protein2e-92337
NC_004557:2289135:230027023002702300926657Clostridium tetani E88, complete genomeethanolamine utilization protein eutL2e-79295
NC_015275:4493500:450092145009214501574654Clostridium lentocellum DSM 5427 chromosome, complete genomemicrocompartments protein2e-79294
NC_014614:284005:295997295997296650654Clostridium sticklandii, complete genomeputative carboxysome-related structural protein with role in ethanolamine utilization5e-74277
NC_009633:286677:297167297167297820654Alkaliphilus metalliredigens QYMF chromosome, complete genomemicrocompartments protein3e-73274
NC_014376:1586649:159808515980851598738654Clostridium saccharolyticum WM1 chromosome, complete genomemicrocompartments protein2e-72271
NC_013192:63111:696396963970292654Leptotrichia buccalis DSM 1135, complete genomemicrocompartments protein7e-72270
NC_013517:1055854:113712811371281137781654Sebaldella termitidis ATCC 33386, complete genomemicrocompartments protein5e-71266
NC_009922:868262:876516876516877169654Alkaliphilus oremlandii OhILAs, complete genomemicrocompartments protein1e-70266
NC_014654:2277461:228764522876452288298654Halanaerobium sp. 'sapolanicus' chromosome, complete genomemicrocompartments protein1e-69262
NC_018870:705900:725844725844726500657Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine utilization protein EutL4e-63241
NC_009253:1381401:139048413904841391137654Desulfotomaculum reducens MI-1 chromosome, complete genomemicrocompartments protein6e-58223
NC_018515:1663912:167236016723601673007648Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine utilization protein7e-55213
NC_014019:3543389:355409635540963554749654Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine utilization protein EutL9e-55213
NC_016584:1998000:202666320266632027310648Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein2e-54212
NC_010468:1343228:135997613599761360635660Escherichia coli ATCC 8739, complete genomemicrocompartments protein4e-54211
NC_004337:2548288:255167725516772552336660Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-54211
NC_008258:2542863:254537925453792546038660Shigella flexneri 5 str. 8401, complete genomehypothetical protein4e-54211
NC_004741:2526421:252981125298112530470660Shigella flexneri 2a str. 2457T, complete genomehypothetical protein4e-54211
NC_017328:2586171:258931425893142589973660Shigella flexneri 2002017 chromosome, complete genomeMicrocompartments protein4e-54211
NC_016584:1714507:171892317189231719570648Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein7e-53206