Pre_GI: BLASTP Hits

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Query: NC_008258:2100646:2115811 Shigella flexneri 5 str. 8401, complete genome

Start: 2115811, End: 2117067, Length: 1257

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2153083:2168247216824721695031257Shigella flexneri 2002017 chromosome, complete genomeputative O-antigen transporter0829
NC_004741:2081649:2096813209681320980691257Shigella flexneri 2a str. 2457T, complete genomepolysaccharide biosynthesis protein0829
NC_004337:2098736:2113946211394621152021257Shigella flexneri 2a str. 301, complete genomepolysaccharide biosynthesis protein0829
NC_007946:2231872:2245400224540022466471248Escherichia coli UTI89, complete genomeputative O-antigen transporter5e-92338
NC_016816:1676460:1690102169010216912561155Pantoea ananatis LMG 5342, complete genomeO-antigen flippase3e-89328
NC_008781:3688965:3701180370118037024541275Polaromonas naphthalenivorans CJ2, complete genomepolysaccharide biosynthesis protein1e-56221
NC_015856:940625:9489449489449502841341Collimonas fungivorans Ter331 chromosome, complete genomeO-antigen and teichoic acid export membrane protein2e-54213
NC_014207:1366766:1376507137650713779671461Methylotenera sp. 301 chromosome, complete genomepolysaccharide biosynthesis protein1e-52207
NC_012691:3126500:3140943314094331422141272Tolumonas auensis DSM 9187, complete genomepolysaccharide biosynthesis protein2e-49196
NC_015458:3328905:3330189333018933314631275Pusillimonas sp. T7-7 chromosome, complete genomepolysaccharide biosynthesis protein1e-48194
NC_012660:1804610:1814776181477618159541179Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transporter-like membrane protein8e-48191
NC_008027:1559083:1571917157191715734161500Pseudomonas entomophila L48, complete genomepolysaccharide biosynthesis protein involved O-antigen biosynthesis protein5e-44178
NC_015850:217495:2333392333392348891551Acidithiobacillus caldus SM-1 chromosome, complete genomepolysaccharide biosynthesis protein8e-44178
NC_011761:1155636:1161287116128711627531467Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completepolysaccharide biosynthesis protein2e-40166
NC_007348:2115152:2121475212147521227431269Ralstonia eutropha JMP134 chromosome 2, complete sequencePolysaccharide biosynthesis protein3e-40166
NC_007973:2952004:2966585296658529678441260Ralstonia metallidurans CH34 chromosome 1, complete sequencepolysaccharide biosynthesis protein4e-35149
NC_015850:761500:7692867692867718532568Acidithiobacillus caldus SM-1 chromosome, complete genomepolysaccharide biosynthesis protein4e-32139
NC_007958:830000:8414348414348428401407Rhodopseudomonas palustris BisB5, complete genomepolysaccharide biosynthesis protein3e-29129
NC_015572:1252000:1295800129580012970711272Methylomonas methanica MC09 chromosome, complete genomepolysaccharide biosynthesis protein6e-24112
NC_007955:2122437:2132626213262621338971272Methanococcoides burtonii DSM 6242, complete genomepolysaccharide biosynthesis protein6e-1685.5
NC_012029:1055890:1068368106836810699061539Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomepolysaccharide biosynthesis protein1e-1068.2
NC_013959:2892660:2908881290888129103891509Sideroxydans lithotrophicus ES-1 chromosome, complete genomepolysaccharide biosynthesis protein3e-1066.6
NC_014408:682689:7036937036937049521260Methanothermobacter marburgensis str. Marburg chromosome, completepolysaccharide biosynthesis protein6e-1065.9
NC_014758:1207894:1216529121652912180371509Calditerrivibrio nitroreducens DSM 19672 chromosome, completepolysaccharide biosynthesis protein5e-1065.9
NC_013665:738883:7625507625507638511302Methanocella paludicola SANAE, complete genomeputative polysaccharide biosynthesis protein6e-1065.5
NC_014733:107394:1228411228411243251485Methylovorus sp. MP688 chromosome, complete genomepolysaccharide biosynthesis protein2e-0963.9
NC_016051:1429800:1439936143993614414771542Thermococcus sp. AM4 chromosome, complete genomecapsular polysaccharide biosynthesis protein6e-0962.4
NC_007681:1007375:1050569105056910521191551Methanosphaera stadtmanae DSM 3091, complete genomepredicted O-antigen and teichoic acid export protein1e-0861.2
NC_015172:1621223:1633495163349516349521458Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomepolysaccharide biosynthesis protein2e-0860.8
NC_013716:2255102:2279131227913122806091479Citrobacter rodentium ICC168, complete genomeputative flippase3e-0860.1
NC_003552:2674385:2687117268711726885711455Methanosarcina acetivorans C2A, complete genomepolysaccharide biosynthesis protein3e-0860.1
NC_000868:1130944:1130944113094411324791536Pyrococcus abyssi GE5, complete genomepolysaccharide biosynthesis related protein6e-0859.3
NC_009792:714953:7163577163577178351479Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein7e-0858.9
NC_015761:2062345:2084209208420920856871479Salmonella bongori NCTC 12419, complete genometransmembrane transport protein8e-0858.5
NC_012883:1817358:1832789183278918342101422Thermococcus sibiricus MM 739, complete genomeLipopolysaccharide O-side chain biosynthesis protein (O-antigen transpoter)1e-0758.5
NC_014972:322056:3594283594283606421215Desulfobulbus propionicus DSM 2032 chromosome, complete genomepolysaccharide biosynthesis protein1e-0758.2
NC_008554:1177199:1177199117719911787221524Syntrophobacter fumaroxidans MPOB, complete genomepolysaccharide biosynthesis protein2e-0757.4
NC_011745:2302979:2327456232745623289341479Escherichia coli ED1a chromosome, complete genomecolanic acid exporter3e-0757
CP002185:2233732:2256489225648922579671479Escherichia coli W, complete genomeputative colanic acid exporter3e-0757
CP002516:1846492:1847888184788818493661479Escherichia coli KO11, complete genomepolysaccharide biosynthesis protein3e-0757
NC_016902:1846492:1847888184788818493661479Escherichia coli KO11FL chromosome, complete genomepolysaccharide biosynthesis protein3e-0757
AP010958:2504072:2529665252966525311431479Escherichia coli O103:H2 str. 12009 DNA, complete genomecolanic acid exporter WzxC3e-0757
NC_013353:2504072:2529665252966525311431479Escherichia coli O103:H2 str. 12009, complete genomecolanic acid exporter WzxC3e-0757
NC_003552:1234712:1255168125516812567271560Methanosarcina acetivorans C2A, complete genomepolysaccharide biosynthesis protein3e-0757
NC_014394:1373602:1381015138101513823251311Gallionella capsiferriformans ES-2 chromosome, complete genomepolysaccharide biosynthesis protein3e-0757
CU928145:2324495:2348829234882923503071479Escherichia coli 55989 chromosome, complete genomecolanic acid exporter3e-0757
NC_011748:2324495:2348829234882923503071479Escherichia coli 55989, complete genomecolanic acid exporter3e-0757
CU928160:2155947:2179735217973521812131479Escherichia coli IAI1 chromosome, complete genomecolanic acid exporter2e-0757
NC_011741:2155947:2179735217973521812131479Escherichia coli IAI1 chromosome, complete genomecolanic acid exporter2e-0757
NC_011742:2093503:2115554211555421170321479Escherichia coli S88 chromosome, complete genomecolanic acid exporter2e-0757
NC_004337:2098736:2124212212421221256901479Shigella flexneri 2a str. 301, complete genomeprobable export protein4e-0756.6
NC_008258:2100646:2126077212607721275551479Shigella flexneri 5 str. 8401, complete genomeprobable export protein4e-0756.6
NC_004741:2081649:2107078210707821085561479Shigella flexneri 2a str. 2457T, complete genomeprobable export protein4e-0756.6
NC_017328:2153083:2178513217851321799911479Shigella flexneri 2002017 chromosome, complete genomeputative Membrane protein involved in the export of O-antigen and teichoic acid4e-0756.6
NC_013941:2544569:2574442257444225759201479Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeColanic acid exporter WzxC5e-0756.2
NC_011751:2395882:2417400241740024188781479Escherichia coli UMN026 chromosome, complete genomecolanic acid exporter5e-0756.2
NC_008563:2182270:2205727220572722072051479Escherichia coli APEC O1, complete genomelipopolysaccharide biosynthesis protein6e-0755.8
NC_012947:1720732:1720732172073217222101479Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecolanic acid exporter6e-0755.8
NC_012967:2025127:2051797205179720532751479Escherichia coli B str. REL606 chromosome, complete genomecolanic acid exporter6e-0755.8
NC_009483:3727490:3760208376020837614521245Geobacter uraniireducens Rf4 chromosome, complete genomepolysaccharide biosynthesis protein6e-0755.8
NC_007946:2231872:2256132225613222576101479Escherichia coli UTI89, complete genomelipopolysaccharide biosynthesis protein WzxC7e-0755.5
NC_010498:1035406:1035406103540610368841479Escherichia coli SMS-3-5, complete genomepolysaccharide biosynthesis protein WzxC7e-0755.5
NC_010473:2183567:2207712220771222091901479Escherichia coli str. K-12 substr. DH10B, complete genomecolanic acid exporter7e-0755.5
NC_000913:2092559:2116704211670421181821479Escherichia coli K12, complete genomecolanic acid exporter7e-0755.5
AC_000091:2096672:2120817212081721222951479Escherichia coli W3110 DNA, complete genomecolanic acid exporter7e-0755.5
NC_012759:1983975:2009187200918720106651479Escherichia coli BW2952 chromosome, complete genomecolanic acid exporter7e-0755.5
NC_015497:1287877:1322344132234413235941251Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomepolysaccharide biosynthesis protein7e-0755.5
NC_009800:2156091:2163469216346921648991431Escherichia coli HS, complete genomeputative polysaccharide biosynthesis protein6e-0755.5
NC_009801:2276131:2301603230160323030811479Escherichia coli E24377A, complete genomepolysaccharide biosynthesis protein WzxC1e-0655.1
NC_002695:2769387:2793964279396427954421479Escherichia coli O157:H7 str. Sakai, complete genomeputative export protein9e-0755.1
NC_002655:2839600:2864178286417828656561479Escherichia coli O157:H7 EDL933, complete genomeprobable export protein9e-0755.1
NC_011353:2734222:2758799275879927602771479Escherichia coli O157:H7 str. EC4115 chromosome, complete genomecolanic acid exporter9e-0755.1
NC_013008:2733203:2757780275778027592581479Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecolanic acid exporter9e-0755.1
NC_008253:2134110:2156432215643221579101479Escherichia coli 536, complete genomelipopolysaccharide biosynthesis protein WzxC9e-0755.1
NC_004431:2383901:2406127240612724076051479Escherichia coli CFT073, complete genomeLipopolysaccharide biosynthesis protein wzxC9e-0755.1
NC_011750:1034919:1034919103491910363971479Escherichia coli IAI39 chromosome, complete genomecolanic acid exporter9e-0755.1
NC_011274:2147427:2179605217960521810831479Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91colanic acid exporter1e-0654.7
NC_013361:2848949:2872204287220428736821479Escherichia coli O26:H11 str. 11368 chromosome, complete genomecolanic acid exporter1e-0654.7
NC_004347:3303957:3319856331985633213611506Shewanella oneidensis MR-1, complete genomepolysaccharide biosynthesis domain protein1e-0654.7
NC_013665:849508:8885198885198897931275Methanocella paludicola SANAE, complete genomeputative polysaccharide biosynthesis protein1e-0654.7
NC_011884:3881568:3892898389289838941811284Cyanothece sp. PCC 7425, complete genomepolysaccharide biosynthesis protein2e-0654.3
NC_011149:2110861:2141827214182721433381512Salmonella enterica subsp. enterica serovar Agona str. SL483,lipopolysaccharide biosynthesis protein WzxC2e-0653.9
NC_011205:2283438:2315614231561423171461533Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853colanic acid exporter2e-0653.9
NC_011083:2200613:2231580223158022331121533Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,lipopolysaccharide biosynthesis protein WzxC2e-0653.9
NC_017046:2150072:2181039218103921825501512Salmonella enterica subsp. enterica serovar Typhimurium str. 798transmembrane transport protein2e-0653.9
NC_016857:2150709:2181676218167621831871512Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lipopolysaccharide biosynthesis protein WzxC2e-0653.9
NC_003901:1386000:1393186139318613946521467Methanosarcina mazei Go1, complete genomeoligosaccharide repeat-containing polymerase2e-0653.9
NC_015680:1562535:1569831156983115713601530Pyrococcus yayanosii CH1 chromosome, complete genomepolysaccharide biosynthesis-like protein2e-0653.9
NC_011529:1554500:1567851156785115694011551Thermococcus onnurineus NA1, complete genomePolysaccharide biosynthesis related protein2e-0653.9
NC_014121:3399685:3429356342935634308341479Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completecolanic acid exporter2e-0653.9
NC_011094:2172271:2205504220550422070361533Salmonella enterica subsp. enterica serovar Schwarzengrund strcolanic acid exporter2e-0653.9
NC_016810:2150709:2181676218167621831541479Salmonella enterica subsp. enterica serovar Typhimurium strputative transmembrane transport protein2e-0653.9
NC_008740:1815743:1836634183663418381481515Marinobacter aquaeolei VT8, complete genomepolysaccharide biosynthesis protein2e-0653.9
NC_003198:2109775:2141948214194821434261479Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transmembrane transport protein2e-0653.9
NC_011080:2161696:2195401219540121969331533Salmonella enterica subsp. enterica serovar Newport str. SL254,lipopolysaccharide biosynthesis protein WzxC2e-0653.9
NC_007645:2779381:2802048280204828035051458Hahella chejuensis KCTC 2396, complete genomeMembrane protein involved in the export of O-antigen and teichoic acid2e-0653.9
NC_011294:2156425:2188597218859721900751479Salmonella enterica subsp. enterica serovar Enteritidis strcolanic acid exporter2e-0653.9
NC_016863:2152739:2183706218370621851841479Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1colanic acid exporter2e-0653.9
NC_016860:2148535:2179502217950221809801479Salmonella enterica subsp. enterica serovar Typhimurium strcolanic acid exporter2e-0653.9
NC_016856:2204546:2235513223551322369911479Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Scolanic acid exporter2e-0653.9
NC_006905:2175361:2196465219646521979431479Salmonella enterica subsp. enterica serovar Choleraesuis strputative export protein in colanic acid gene cluster2e-0653.9
NC_003197:2152994:2183961218396121854391479Salmonella typhimurium LT2, complete genomeputative export2e-0653.9
NC_007613:864084:8893838893838908611479Shigella boydii Sb227, complete genomeprobable export protein3e-0653.5
NC_015160:3585354:3591646359164635931421497Odoribacter splanchnicus DSM 20712 chromosome, complete genomepolysaccharide biosynthesis protein3e-0653.5
NC_010658:1090104:1090104109010410915821479Shigella boydii CDC 3083-94, complete genomepolysaccharide biosynthesis protein WzxC3e-0653.5
NC_012125:1693774:1695216169521616967481533Salmonella enterica subsp. enterica serovar Paratyphi C straincolanic acid exporter3e-0653.5
NC_020063:1659795:1659795165979516612731479Enterobacteriaceae bacterium strain FGI 57, complete genomemembrane protein involved in the export of O-antigen and teichoic acid3e-0653.1
NC_006177:2883476:2897656289765628991401485Symbiobacterium thermophilum IAM 14863, complete genomepolysaccharide biosynthesis protein4e-0653.1
NC_008380:855246:8914428914428930371596Rhizobium leguminosarum bv. viciae 3841, complete genomeputative O-antigen transporter4e-0652.8
NC_009436:2836847:2860723286072328622011479Enterobacter sp. 638, complete genomecolanic acid exporter5e-0652.8
NC_015690:7422911:7422911742291174244671557Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein5e-0652.4
NC_016935:7512884:7512884751288475144401557Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein6e-0652.4