Pre_GI: BLASTP Hits

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Query: NC_008228:816000:821162 Pseudoalteromonas atlantica T6c, complete genome

Start: 821162, End: 823021, Length: 1860

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020211:2882093:2889240288924028908801641Serratia marcescens WW4, complete genomeputative phage integrase1e-27125
NC_003911:1265972:1277271127727112788601590Silicibacter pomeroyi DSS-3, complete genomesite-specific recombinase, phage integrase family4e-1996.7
NC_016901:2542110:2553824255382425553501527Shewanella baltica OS678 chromosome, complete genomeintegrase family protein5e-1996.7
NC_012796:2041579:2048611204861120503621752Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase9e-1995.5
NC_009952:2217877:2223872222387222254611590Dinoroseobacter shibae DFL 12, complete genomeputative integrase1e-1895.5
NC_009997:3483157:3489964348996434914901527Shewanella baltica OS195, complete genomeintegrase family protein4e-1893.6
NC_009997:2585588:2593907259390725954331527Shewanella baltica OS195, complete genomeintegrase family protein4e-1893.6
NC_016901:3430401:3437208343720834387341527Shewanella baltica OS678 chromosome, complete genomeintegrase family protein4e-1893.6
NC_013854:1686997:1697457169745716991721716Azospirillum sp. B510, complete genomephage integrase family protein1e-1792
NC_013421:3752619:3762474376247437644141941Pectobacterium wasabiae WPP163, complete genomeintegrase family protein7e-1789.4
NC_020409:584000:5846785846785863511674Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Phage integrase7e-1789.4
NC_007946:289425:2952282952282971681941Escherichia coli UTI89, complete genomeputative integrase1e-1688.6
NC_009434:3611738:3619731361973136210711341Pseudomonas stutzeri A1501, complete genomeintegrase5e-1686.7
NC_008027:1847040:1862344186234418636361293Pseudomonas entomophila L48, complete genomeintegrase5e-1686.7
NC_015740:2614317:263366526336652634567903Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein1e-1585.5
NC_012808:58701:6196261962637671806Methylobacterium extorquens AM1, complete genomehypothetical protein1e-1585.1
NC_010501:3987615:3992949399294939942741326Pseudomonas putida W619, complete genomeintegrase family protein1e-1585.1
NC_007519:1782067:1787842178784217896921851Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein2e-1584.3
NC_009800:4529504:4532707453270745346561950Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family3e-1584.3
NC_015410:2258800:2276000227600022773761377Pseudomonas mendocina NK-01 chromosome, complete genomeintegrase family protein4e-1583.6
NC_015381:3789661:3796625379662537982231599Burkholderia gladioli BSR3 chromosome 1, complete sequenceputative phage-related integrase8e-1582.8
NC_016010:1169850:1185584118558411871041521Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeIntegrase XerC2e-1481.6
NC_007508:1221500:1255730125573012572471518Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative integrase1e-1481.6
NC_016010:1822212:1827666182766618291471482Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase5e-1479.7
NC_011662:1160887:1170392117039211715971206Thauera sp. MZ1T, complete genomehypothetical protein8e-1479.3
NC_015850:736680:7427277427277441751449Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein1e-1378.6
NC_014117:132524:1736441736441747381095Burkholderia sp. CCGE1002 chromosome chromosome 1, completeintegrase family protein2e-1378.2
NC_013173:953633:9706779706779727402064Desulfomicrobium baculatum DSM 4028, complete genomeintegrase family protein2e-1378.2
NC_006350:845513:8574748574748588321359Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative phage-related integrase7e-1376.3
NC_009076:779407:7927997927997941571359Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family7e-1376.3
NC_007434:1001514:1016158101615810173961239Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative phage-related integrase7e-1376.3
NC_013456:2528284:2536921253692125386211701Vibrio sp. Ex25 chromosome 1, complete genomeintegrase8e-1375.9
NC_007643:3799425:3824154382415438258541701Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase9e-1375.9
NC_003902:1858349:1865420186542018668141395Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase1e-1275.5
NC_014541:1231021:1236294123629412375351242Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein2e-1274.7
NC_007298:3764048:3776475377647537781541680Dechloromonas aromatica RCB, complete genomePhage integrase3e-1274.3
NC_014973:3452100:3471071347107134723601290Geobacter sp. M18 chromosome, complete genomeintegrase family protein4e-1273.6
NC_011146:3426500:3474592347459234759021311Geobacter bemidjiensis Bem, complete genomeintegrase family protein5e-1273.2
NC_010688:1192410:1196622119662211981871566Xanthomonas campestris pv. campestris, complete genomephage-related integrase6e-1273.2
NC_010725:356609:3691903691903708721683Methylobacterium populi BJ001, complete genomeintegrase family protein6e-1273.2
NC_002939:1866651:1874575187457518762451671Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu5, integrase7e-1272.8
NC_009348:2034500:2041208204120820424731266Aeromonas salmonicida subsp. salmonicida A449, complete genomephage integrase family site specific recombinase1e-1172.4
NC_008702:815264:8306858306858323551671Azoarcus sp. BH72, complete genomeputative integrase1e-1172
NC_007086:2887875:2931121293112129322631143Xanthomonas campestris pv. campestris str. 8004, complete genomephage-related integrase2e-1171.2
NC_011146:1998981:2013194201319420144981305Geobacter bemidjiensis Bem, complete genomeintegrase family protein3e-1170.9
NC_008609:1394377:1408298140829814094431146Pelobacter propionicus DSM 2379, complete genomehypothetical protein4e-1170.5
NC_015733:4130000:4140692414069241419091218Pseudomonas putida S16 chromosome, complete genomeintegrase family protein4e-1170.5
NC_004603:2235142:2240007224000722413441338Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-1170.1
NC_010682:460523:4937344937344950531320Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein6e-1169.7
NC_016010:1822212:1855472185547218566231152Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase1e-1068.9
NC_008782:1863853:1871054187105418726701617Acidovorax sp. JS42, complete genomephage integrase family protein1e-1068.9
NC_013446:4281250:4294269429426942959961728Comamonas testosteroni CNB-2, complete genomePhage integerase2e-1068.2
NC_009439:4661102:4664986466498646666801695Pseudomonas mendocina ymp, complete genomehypothetical protein2e-1068.2
NC_009434:608765:6778376778376802902454Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-1068.2
NC_013361:3867558:3901815390181539034221608Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase2e-1067.8
NC_011757:4293000:4318726431872643204951770Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein2e-1067.8
NC_014355:139324:1433791433791448211443Candidatus Nitrospira defluvii, complete genomeputative integrase3e-1067.4
NC_012660:1579204:1604792160479216062341443Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage integrase3e-1067.4
NC_012918:1697860:1704183170418317054751293Geobacter sp. M21 chromosome, complete genomeintegrase family protein3e-1067.4
NC_015567:1127780:1135692113569211367711080Serratia sp. AS9 chromosome, complete genomeintegrase family protein5e-1067
NC_015566:1127595:1135507113550711365861080Serratia sp. AS12 chromosome, complete genomeintegrase family protein5e-1067
NC_007643:791500:7959047959047970641161Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase5e-1066.6
NC_010688:3515885:3552388355238835537821395Xanthomonas campestris pv. campestris, complete genomephage-related integrase9e-1065.9
NC_010511:1641416:1641416164141616429631548Methylobacterium sp. 4-46 chromosome, complete genomeintegrase domain-containing protein1e-0965.5
NC_014117:132524:1345211345211360951575Burkholderia sp. CCGE1002 chromosome chromosome 1, completehypothetical protein2e-0964.7
NC_010524:1005355:1017147101714710183131167Leptothrix cholodnii SP-6, complete genomeintegrase family protein2e-0964.7
NC_014307:1619000:1623749162374916253741626Ralstonia solanacearum CFBP2957 chromosome, complete genomephage integrase4e-0963.9
NC_009720:216589:2196452196452212971653Xanthobacter autotrophicus Py2, complete genomeintegrase family protein3e-0963.9
NC_003198:3042000:3058163305816330598091647Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible integrase4e-0963.5
NC_011663:2813033:2823925282392528257331809Shewanella baltica OS223 chromosome, complete genomeintegrase family protein5e-0963.2
NC_009434:608765:6764126764126776831272Pseudomonas stutzeri A1501, complete genomehypothetical protein7e-0962.8
NC_010511:7024412:7031164703116470326931530Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein8e-0962.8
NC_010338:1394550:1401072140107214028381767Caulobacter sp. K31, complete genomehypothetical protein9e-0962.4
NC_009511:2726296:2731027273102727328081782Sphingomonas wittichii RW1 chromosome, complete genomephage integrase family protein1e-0862.4
NC_010682:460523:4676864676864692871602Ralstonia pickettii 12J chromosome 1, complete sequencephage integrase2e-0861.6
NC_010688:1192410:1205404120540412068521449Xanthomonas campestris pv. campestris, complete genomephage-related integrase2e-0861.6
NC_013353:3474077:3504839350483935064641626Escherichia coli O103:H2 str. 12009, complete genomeintegrase2e-0861.2
AP010958:3474077:3504839350483935064641626Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase2e-0861.2
NC_013921:1396500:1398270139827013994661197Thermoanaerobacter italicus Ab9 chromosome, complete genomeintegrase family protein3e-0860.8
NC_014973:1941500:1955814195581419571001287Geobacter sp. M18 chromosome, complete genomeintegrase family protein3e-0860.5
NC_009485:7021228:7039994703999470418501857Bradyrhizobium sp. BTAi1 chromosome, complete genomelambda integrase-like/ DNA breaking-rejoining enzyme, catalytic core4e-0860.5
NC_003919:1716831:1744033174403317455651533Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related integrase5e-0860.1
NC_014972:3604534:3621721362172136228721152Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein5e-0860.1
NC_003919:1716831:1730204173020417315381335Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase5e-0860.1
NC_003902:1858349:1882328188232818837761449Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase6e-0859.7
NC_015850:1006980:1027150102715010289371788Acidithiobacillus caldus SM-1 chromosome, complete genomephage integrase7e-0859.7
NC_010725:4618000:4625361462536146269831623Methylobacterium populi BJ001, complete genomelambda integrase-like/DNA breaking-rejoining enzyme, catalytic core9e-0859.3
NC_010688:3229820:3237928323792832394601533Xanthomonas campestris pv. campestris, complete genomephage-related integrase9e-0859.3
NC_008435:604772:6092996092996109421644Rhodopseudomonas palustris BisA53, complete genomephage integrase family protein8e-0859.3
NC_013209:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-01, complete genomephage integrase8e-0859.3
NC_017100:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-03, complete genomephage integrase8e-0859.3
NC_017108:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-12, complete genomephage integrase8e-0859.3
NC_017111:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-32, complete genomephage integrase8e-0859.3
NC_013716:5201097:5207462520746252091021641Citrobacter rodentium ICC168, complete genomeputative integrase8e-0859.3
NC_017150:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-01-42C, complete genomephage integrase8e-0859.3
NC_017146:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-26, complete genomephage integrase8e-0859.3
NC_017125:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-22, complete genomephage integrase8e-0859.3
NC_017121:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-07, complete genomephage integrase8e-0859.3
NC_011283:785973:7925257925257941651641Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase1e-0758.5
NC_011000:3362382:3368967336896733707271761Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative integrase3e-0757.8
NC_004631:3030580:3043685304368530451481464Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-0757.4
NC_010804:2808676:2815315281531528166851371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase / tyrosine recombinase3e-0757.4
NC_009256:3056000:3062577306257730639471371Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage integrase family protein3e-0757.4
NC_010084:695817:7080887080887094581371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein3e-0757.4
NC_011000:1023800:1035090103509010364601371Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative phage-related integrase3e-0757.4
NC_016832:3020000:3032325303232530339441620Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Site-specific recombinase, phage integrase4e-0757
NC_009434:3611738:3621234362123436224931260Pseudomonas stutzeri A1501, complete genomehypothetical protein6e-0756.2
NC_007761:241900:2560482560482576311584Rhizobium etli CFN 42, complete genomeputative recombinase protein, phage integrase family9e-0755.8
NC_012796:2683711:2690065269006526917561692Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase9e-0755.8
NC_004603:1115134:1121252112125211223881137Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein8e-0755.8
NC_010084:2674972:2682560268256026845151956Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein1e-0655.5
NC_010804:831000:8402588402588422131956Burkholderia multivorans ATCC 17616 chromosome 1, completetyrosine recombinase1e-0655.5
NC_015422:3366500:3376628337662833779141287Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein2e-0655.1
NC_009850:1862602:1876559187655918780941536Arcobacter butzleri RM4018, complete genomehypothetical protein2e-0654.7
NC_016803:593484:5983485983486000871740Desulfovibrio desulfuricans ND132 chromosome, complete genomeintegrase family protein6e-0653.1