Pre_GI: BLASTP Hits

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Query: NC_007952:3196085:3218882 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3218882, End: 3221113, Length: 2232

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009434:3611738:3745515374551537477342220Pseudomonas stutzeri A1501, complete genomeATP-dependent helicase0798
NC_009439:3770282:3781365378136537835812217Pseudomonas mendocina ymp, complete genomeDEAD/DEAH box helicase domain-containing protein0793
NC_008463:2467219:2489403248940324916132211Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative helicase0778
NC_009656:4527457:4563274456327445654962223Pseudomonas aeruginosa PA7 chromosome, complete genomeDEAD/DEAH box helicase0767
NC_017075:1869326:1869326186932618715332208Rubrivivax gelatinosus IL144, complete genomeputative ATP-dependent helicase0700
NC_012918:1444333:1456652145665214588832232Geobacter sp. M21 chromosome, complete genomeDEAD/DEAH box helicase0696
NC_010002:5691968:5700427570042757026492223Delftia acidovorans SPH-1, complete genomeDEAD/DEAH box helicase domain protein0696
NC_014910:1200605:1216539121653912187432205Alicycliphilus denitrificans BC chromosome, complete genomedead/deah box helicase domain protein0693
NC_016010:1822212:1842738184273818446961959Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeLhr-like helicase6e-172604
NC_007493:1929000:1939988193998819421592172Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceATP-dependent helicase4e-154545
NC_015580:1584078:1597259159725915994332175Novosphingobium sp. PP1Y, complete genomeATP-dependent helicase Lhr and Lhr-like helicase9e-154544
NC_007333:39579:7194471944741542211Thermobifida fusca YX, complete genomehelicase, C-terminal:DEAD/DEAH box helicase, N-terminal7e-144511
NC_016612:28451:4061740617428152199Klebsiella oxytoca KCTC 1686 chromosome, complete genomeATP-dependent helicase4e-142505
NC_017047:2042346:2051482205148220536802199Rahnella aquatilis HX2 chromosome, complete genomeDEAD/DEAH box helicase1e-138494
NC_014217:2020737:2030412203041220326552244Starkeya novella DSM 506 chromosome, complete genomeDEAD/DEAH box helicase domain protein2e-138493
NC_008435:2658986:2690170269017026924222253Rhodopseudomonas palustris BisA53, complete genomeDEAD/DEAH box helicase domain protein2e-135483
NC_006370:1810842:1829710182971018319082199Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical ATP-dependent helicase6e-135481
NC_008639:2545107:2552272255227225544042133Chlorobium phaeobacteroides DSM 266, complete genomeDEAD/DEAH box helicase domain protein7e-96352
NC_007907:761486:7848037848037869652163Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-87323
NC_015172:850802:8538618538618560262166Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-86321
NC_014408:682689:6826896826896848212133Methanothermobacter marburgensis str. Marburg chromosome, completeATP-dependent helicase1e-60235
NC_011891:1278199:1298935129893513010402106Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/DEAH box helicase domain protein6e-58226
NC_016887:1949927:1974963197496319770952133Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP-dependent helicase4e-51203
NC_013440:1624561:1625910162591016286872778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease1e-49198
NC_014148:3959960:3979304397930439814242121Planctomyces limnophilus DSM 3776 chromosome, complete genomeDEAD/DEAH box helicase domain protein7e-49196
NC_013440:811780:8131298131298159062778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease6e-49196
NC_013440:1580802:1580802158080215829372136Haliangium ochraceum DSM 14365, complete genomeDEAD/DEAH box helicase domain protein3e-45183
NC_009142:5698100:5714083571408357163772295Saccharopolyspora erythraea NRRL 2338, complete genomeputative ATP-dependent helicase6e-45182
NC_007333:810381:8285118285118306462136Thermobifida fusca YX, complete genomehelicase, C-terminal:DEAD/DEAH box helicase, N-terminal2e-44181
NC_003888:7337453:7374208737420873764032196Streptomyces coelicolor A3(2), complete genomeATP-dependent helicase3e-44180
NC_009338:3359500:3386977338697733890672091Mycobacterium gilvum PYR-GCK chromosome, complete genomeDEAD/DEAH box helicase4e-43177
NC_007645:3581114:3587257358725735893562100Hahella chejuensis KCTC 2396, complete genomeLhr-like helicase1e-42175
NC_010572:1872840:1898715189871519008532139Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP-dependent helicase1e-42175
NC_013194:3861409:3869550386955038716852136Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeDEAD/DEAH box helicase domain protein6e-42173
NC_008757:151862:1707931707931728202028Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeDEAD/DEAH box helicase domain protein5e-40166
NC_009776:157311:1651041651041679352832Ignicoccus hospitalis KIN4/I, complete genomeDEAD/DEAH box helicase domain protein7e-40166
NC_013510:1703464:1711029171102917131132085Thermomonospora curvata DSM 43183, complete genomeDEAD/DEAH box helicase domain protein8e-40166
NC_019942:1211535:1211535121153512142072673Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase2e-35151
NC_013926:1166454:1168343116834311710152673Aciduliprofundum boonei T469 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-34148
NC_010525:1177154:1192683119268311954212739Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein2e-34148
NC_019792:3219333:3239661323966132425012841Natronobacterium gregoryi SP2 chromosome, complete genomeLhr-like helicase3e-34147
NC_017275:1189162:1214566121456612173612796Sulfolobus islandicus HVE10/4 chromosome, complete genomeDEAD/DEAH box helicase6e-33142
NC_013159:502928:5287135287135308212109Saccharomonospora viridis DSM 43017, complete genomeLhr-like helicase3e-32140
NC_007955:742834:7620857620857649192835Methanococcoides burtonii DSM 6242, complete genomeDEAD/DEAH box helicase-like protein4e-32140
NC_014507:982000:9821929821929848792688Methanoplanus petrolearius DSM 11571 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein5e-32139
NC_016070:719791:7365697365697393162748Thermoproteus tenax Kra 1, complete genomeATP-dependent helicase2e-31138
NC_006624:873525:8879228879228906992778Thermococcus kodakarensis KOD1, complete genomelarge helicase-related protein9e-31135
NC_017954:301562:3015623015623043512790Thermogladius cellulolyticus 1633 chromosome, complete genomeDEAD/DEAH box helicase1e-30135
NC_000868:757823:7769427769427796802739Pyrococcus abyssi GE5, complete genomelarge helicase-related protein6e-30133
NC_008391:404388:4208294208294253554527Burkholderia cepacia AMMD chromosome 2, complete sequenceDEAD/H associated domain protein1e-29132
NC_010525:1314999:1335599133559913384122814Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein8e-30132
NC_010001:902506:9154059154059195504146Clostridium phytofermentans ISDg, complete genomeDEAD/DEAH box helicase domain protein2e-28127
NC_012883:1283529:1301281130128113040312751Thermococcus sibiricus MM 739, complete genomeLarge helicase-related protein8e-28126
NC_002935:781172:7993437993438041574815Corynebacterium diphtheriae NCTC 13129, complete genomePutative ATP-dependent helicase5e-27123
NC_015683:732668:7463117463117513205010Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein1e-26122
NC_007164:511171:5318585318585368524995Corynebacterium jeikeium K411, complete genomeputative ATP-dependent DNA helicase3e-26120
NC_015151:1427965:1488726148872614915662841Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeDEAD/DEAH box helicase8e-26119
NC_009515:474285:4742854742854768852601Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent helicase5e-25117
NC_015673:397947:4194264194264243844959Corynebacterium resistens DSM 45100 chromosome, complete genomeATP-dependent DNA helicase7e-25116
NC_014160:801618:8016188016188044252808Thermosphaera aggregans DSM 11486 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-24114
NC_014537:603564:6331606331606360602901Vulcanisaeta distributa DSM 14429 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein4e-24113
NC_008536:3601841:3602640360264036072054566Solibacter usitatus Ellin6076, complete genomeDEAD/H associated domain protein8e-24112
NC_004547:1837500:1842241184224118470374797Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeprobable ATP-dependent helicase1e-22109
NC_011891:4450031:4476352447635244806114260Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein8e-23109
NC_007508:2941889:2959960295996029643544395Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA helicase Lhr3e-22107
NC_000854:1342983:1354540135454013572452706Aeropyrum pernix K1, complete genomeputative ATP-dependent helicase3e-22107
NC_012803:361127:3561023561023611305029Micrococcus luteus NCTC 2665, complete genome5e-22106
NC_011891:2088134:2088134208813420927444611Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein6e-22106
NC_012590:850130:8675268675268724694944Corynebacterium aurimucosum ATCC 700975, complete genomeputative ATP-dependent DNA helicase1e-21105
NC_021184:2936244:2936244293624429407404497Desulfotomaculum gibsoniae DSM 7213, complete genomeLhr-like helicase1e-21105
NC_008095:7499255:7518954751895475215362583Myxococcus xanthus DK 1622, complete genomeATP-dependent helicase, DEAD/DEAH box family3e-1997.4
NC_015723:1998363:1998363199836320010502688Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig8e-1996.3
NC_019942:1078837:1096394109639410979771584Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase3e-1894.4
NC_019977:1897556:1897556189755619003602805Methanomethylovorans hollandica DSM 15978, complete genomehelicase family protein with metal-binding cysteine cluster3e-1790.9
NC_008319:1306482:1316964131696413194142451Synechococcus sp. CC9311, complete genomeATP-dependent helicase, DEAD/DEAH box family protein7e-1789.7
NC_015562:1230532:1246389124638912505134125Methanotorris igneus Kol 5 chromosome, complete genomeDEAD/H associated domain-containing protein3e-1687.8
NC_007513:987969:1002947100294710054212475Synechococcus sp. CC9902, complete genomeDEAD/DEAH box helicase-like5e-1686.7
NC_016010:65949:6594965949684442496Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster2e-1378.6
NC_016147:3349272:3363478336347833660302553Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster2e-1378.2
NC_007508:64955:6641566415689102496Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative helicase2e-1378.2
NC_017271:64293:6429364293667882496Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein2e-1378.2
NC_013741:1390823:1408399140839914125114113Archaeoglobus profundus DSM 5631, complete genometranscriptional regulator, XRE family2e-1378.2
NC_010688:69458:6945869458719772520Xanthomonas campestris pv. campestris, complete genomeputative ATP-dependent helicase3e-1377.8
NC_008312:5637974:5655409565540956581262718Trichodesmium erythraeum IMS101, complete genomeDEAD/DEAH box helicase-like8e-1376.3
NC_012440:423217:4245494245494269992451Persephonella marina EX-H1, complete genomeATP-dependent rna helicase, dead/deah box family1e-1275.9
NC_007164:2261644:2283522228352222858762355Corynebacterium jeikeium K411, complete genomeputative helicase2e-1274.7
NC_017096:779550:8001418001418023812241Caldisericum exile AZM16c01, complete genomeputative ATP-dependent helicase4e-1273.9
NC_013967:1590500:1614465161446516168162352Haloferax volcanii DS2 chromosome, complete genomeATP-dependent helicase2e-1171.6
NC_007907:761486:7897497897497923852637Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1171.2
NC_007907:761486:7871527871527897192568Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-1169.3
NC_013169:1845735:1845735184573518507174983Kytococcus sedentarius DSM 20547, complete genomeATP dependent helicase, Lhr family2e-1068.2
NC_010162:11387949:1139139111391391113976906300Sorangium cellulosum 'So ce 56', complete genomehypothetical protein5e-1067
NC_013595:480000:4958494958494982962448Streptosporangium roseum DSM 43021, complete genomeDEAD/DEAH box helicase domain-containing protein6e-1066.6
NC_016582:7101701:7119473711947371218452373Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative ATP-dependent RNA helicase5e-0963.5
NC_003155:5616000:5629010562901056315172508Streptomyces avermitilis MA-4680, complete genomeATP-dependent RNA helicase2e-0861.6
NC_013158:1620761:1641383164138316437852403Halorhabdus utahensis DSM 12940, complete genomeDEAD/DEAH box helicase domain protein1e-0759.3
NC_014297:1:2182621826241622337Halalkalicoccus jeotgali B3 chromosome, complete genomeDEAD/DEAH box helicase domain protein6e-0756.6
NC_013526:835117:8531508531508582465097Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeDEAD/DEAH box helicase domain protein7e-0756.6
NC_015573:2323268:2330178233017823352565079Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-0655.1
NC_014408:806720:8132608132608157372478Methanothermobacter marburgensis str. Marburg chromosome, completehelicase5e-0653.9
NC_016114:3938721:3954133395413339566432511Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein7e-0653.1