Pre_GI: BLASTP Hits

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Query: NC_007613:4156841:4160426 Shigella boydii Sb227, complete genome

Start: 4160426, End: 4162423, Length: 1998

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4530000:4530044453004445320411998Shigella sonnei Ss046, complete genomehypothetical protein01308
NC_011748:4695932:4695932469593246979171986Escherichia coli 55989, complete genomeputative alkyl sulfatase01304
CU928145:4695932:4695932469593246979171986Escherichia coli 55989 chromosome, complete genomeputative alkyl sulfatase01304
CP002185:4566150:4569735456973545717201986Escherichia coli W, complete genomepredicted alkyl sulfatase01304
NC_009801:4643000:4643130464313046451151986Escherichia coli E24377A, complete genomemetallo-beta-lactamase superfamily protein01302
NC_009800:4332229:4335814433581443377991986Escherichia coli HS, complete genomemetallo-beta-lactamase superfamily protein01302
NC_013364:5040268:5043853504385350458381986Escherichia coli O111:H- str. 11128, complete genomeputative alkyl sulfatase01302
NC_011741:4395156:4395156439515643971411986Escherichia coli IAI1 chromosome, complete genomeputative alkyl sulfatase01300
CU928160:4395156:4395156439515643971411986Escherichia coli IAI1 chromosome, complete genomeputative alkyl sulfatase01300
NC_016822:4686971:4686971468697146889561986Shigella sonnei 53G, complete genomehypothetical protein01299
NC_011751:4795928:4797462479746247994471986Escherichia coli UMN026 chromosome, complete genomeputative alkyl sulfatase01266
NC_013517:2437574:2439672243967224416391968Sebaldella termitidis ATCC 33386, complete genomebeta-lactamase domain protein2e-176619
NC_016818:3114460:3124109312410931260881980Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completealkyl sulfatase-like hydrolase3e-175615
NC_020063:2343813:2351236235123623532181983Enterobacteriaceae bacterium strain FGI 57, complete genomealkyl sulfatase-like hydrolase9e-175613
NC_006511:1063249:1078444107844410804231980Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative hydrolase2e-173609
NC_011147:1057259:1072454107245410744331980Salmonella enterica subsp. enterica serovar Paratyphi A strhydrolase2e-173609
NC_020063:2343813:2345752234575223477281977Enterobacteriaceae bacterium strain FGI 57, complete genomealkyl sulfatase-like hydrolase2e-173609
NC_011294:1220526:1228217122821712301961980Salmonella enterica subsp. enterica serovar Enteritidis strphage encoded hydrolase2e-173609
NC_011205:1345511:1364141136414113661081968Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853alkyl/aryl-sulfatase BDS12e-173609
NC_016831:1734292:1747552174755217495191968Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative phage encoded hydrolase2e-173609
NC_004631:1091303:1095911109591110978901980Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative hydrolase6e-173608
NC_003198:1867456:1883242188324218852211980Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative hydrolase6e-173608
NC_016832:1090274:1094882109488210968611980Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-173608
NC_012125:1897611:1912472191247219144391968Salmonella enterica subsp. enterica serovar Paratyphi C strainhydrolase4e-173608
NC_012731:3593000:3601725360172536037011977Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative hydrolase6e-173607
NC_006905:1961774:1978287197828719802661980Salmonella enterica subsp. enterica serovar Choleraesuis strputative hydrolase5e-172605
NC_014618:3700640:3700640370064037025741935Enterobacter cloacae SCF1 chromosome, complete genomebeta-lactamase domain-containing protein1e-167590
NC_016626:1699500:1730390173039017323871998Burkholderia sp. YI23 plasmid byi_1p, complete sequencebeta-lactamase3e-167588
NC_016626:1781956:1811545181154518135992055Burkholderia sp. YI23 plasmid byi_1p, complete sequencebeta-lactamase6e-164578
NC_018691:4619245:4637412463741246393221911Alcanivorax dieselolei B5 chromosome, complete genomebeta-lactamase-like protein3e-159562
NC_010506:5155951:5170218517021851723082091Shewanella woodyi ATCC 51908, complete genomebeta-lactamase domain protein4e-141502
NC_017506:4380196:4380196438019643818241629Marinobacter adhaerens HP15 chromosome, complete genomemetallo-beta-lactamase superfamily protein8e-140498
NC_007492:2629350:2630141263014126321081968Pseudomonas fluorescens PfO-1, complete genomeBeta-lactamase-like1e-136487
NC_013131:7889127:7891121789112178929441824Catenulispora acidiphila DSM 44928, complete genomebeta-lactamase domain protein6e-136484
NC_014153:1663597:1678083167808316799961914Thiomonas intermedia K12 chromosome, complete genomebeta-lactamase domain-containing protein6e-131468
NC_012731:3593000:359988335998833600818936Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative hydrolase4e-69263
NC_015589:366296:3836553836553849351281Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebeta-lactamase domain-containing protein2e-46187
NC_007761:1097531:1112240111224011135561317Rhizobium etli CFN 42, complete genomeputative alkyl sulfatase beta-lactamase family protein3e-44180
NC_015731:2039317:2064480206448020657871308Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein7e-22106
NC_002944:292974:3064713064713076671197Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-1068.6
NC_008595:312861:3280783280783293161239Mycobacterium avium 104, complete genomemetallo-beta-lactamase superfamily protein7e-1066.2
NC_020133:5965500:598654359865435987232690Mycobacterium liflandii 128FXT, complete genome6e-0756.6