Pre_GI: BLASTP Hits

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Query: NC_007607:87000:121613 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 121613, End: 122101, Length: 489

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:1077548:1098701109870111000741374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc132e-65247
NC_011601:1466496:1481557148155714829301374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc132e-65247
NC_011601:1269500:1291265129126512926381374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase of ISEc132e-65247
NC_010498:1117938:112239611223961122995600Escherichia coli SMS-3-5, complete genome6e-37152
NC_014228:3505320:3523246352324635243671122Xenorhabdus nematophila ATCC 19061, complete genome1e-25115
NC_007946:1119000:112129311212931122186894Escherichia coli UTI89, complete genomehypothetical protein8e-25112
NC_004431:1211000:121197712119771212342366Escherichia coli CFT073, complete genomehypothetical protein2e-24111
NC_002655:3919545:392714239271423927882741Escherichia coli O157:H7 EDL933, complete genomeputative transposase5e-1786.7
NC_013008:3911356:391880239188023919692891Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase6e-1786.7
NC_011353:3956630:396407639640763964966891Escherichia coli O157:H7 str. EC4115 chromosome, complete genome6e-1786.7
AP010958:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009 DNA, complete genome8e-1786.3
NC_013353:5090696:511128151112815112240960Escherichia coli O103:H2 str. 12009, complete genome8e-1786.3
NC_013364:3701895:370879037087903709749960Escherichia coli O111:H- str. 11128, complete genome8e-1786.3
AP010958:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS608 transposase7e-1786.3
NC_013353:3627355:363495036349503635759810Escherichia coli O103:H2 str. 12009, complete genomeIS608 transposase7e-1786.3
NC_007946:1119000:112082311208231121281459Escherichia coli UTI89, complete genomeputative transposase1e-1065.9
NC_004431:1211000:121150712115071211965459Escherichia coli CFT073, complete genomePutative Transposase1e-1065.9
NC_019892:5368096:5369424536942453708091386Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase family protein2e-1065.1
NC_008508:2572450:258394725839472584678732Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Transposase, ISLbp112e-0858.5
NC_008510:2605500:261720826172082617939732Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Transposase, ISLbp116e-0856.6
NC_009485:1648896:1653244165324416544311188Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase7e-0856.6
NC_019902:2372097:2375856237585623781712316Thioalkalivibrio nitratireducens DSM 14787, complete genomeputative transposase4e-0650.8
NC_015186:2884866:2886469288646928878571389Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element4e-0650.4
NC_015186:347346:3618883618883632761389Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element4e-0650.4