Pre_GI: BLASTP Hits

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Query: NC_007607:87000:120388 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 120388, End: 120630, Length: 243

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:86445:911009110091342243Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence6e-34142
NC_010498:4856011:487110448711044871403300Escherichia coli SMS-3-5, complete genomehypothetical protein5e-31132
CP002797:4603787:461979546197954620019225Escherichia coli NA114, complete genomePutative transposase7e-30129
NC_014500:1862000:1898820189882019003551536Dickeya dadantii 3937 chromosome, complete genometransposase, IS3 family1e-28125
NC_014842:19411:2227522275238071533Pantoea sp. At-9b plasmid pPAT9B05, complete sequenceIntegrase catalytic region2e-25114
NC_020260:882307:903547903547904272726Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-23107
NC_014121:3776902:378244637824463783171726Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative integrase2e-22104
NC_014839:12519:1559215592171241533Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceIntegrase catalytic region1e-2098.6
NC_013446:2820000:284026328402632841003741Comamonas testosteroni CNB-2, complete genomeIntegrase, catalytic region4e-1787
NC_008782:3167440:3218129321812932196671539Acidovorax sp. JS42, complete genomeIntegrase, catalytic region7e-1785.9
NC_007973:3240866:3247826324782632493641539Ralstonia metallidurans CH34 chromosome 1, complete sequenceIntegrase, catalytic region8e-1785.5
NC_010002:2933909:2940968294096829425061539Delftia acidovorans SPH-1, complete genomeIntegrase catalytic region8e-1785.5
NC_013446:1648556:1684363168436316859011539Comamonas testosteroni CNB-2, complete genomeIntegrase, catalytic region8e-1785.5
NC_007948:360199:3601993601993617461548Polaromonas sp. JS666, complete genomeIntegrase, catalytic region1e-1685.1
NC_015383:229036:2359922359922370321041Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequenceintegrase, catalytic region2e-1684.7
NC_015381:2405446:2413309241330924148471539Burkholderia gladioli BSR3 chromosome 1, complete sequenceputative transposase3e-1684
NC_016633:2688144:2688144268814426897001557Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometransposase8e-1682.4
NC_016633:2688144:2692249269224926938051557Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometransposase8e-1682.4
NC_015152:2528399:2546312254631225478741563Spirochaeta sp. Buddy chromosome, complete genome7e-1682.4
NC_008340:1733735:1746503174650317480201518Alkalilimnicola ehrlichei MLHE-1, complete genomeIntegrase, catalytic region9e-1682
NC_008340:1733735:1742504174250417440211518Alkalilimnicola ehrlichei MLHE-1, complete genomeIntegrase, catalytic region9e-1682
NC_008789:1393526:1413395141339514149271533Halorhodospira halophila SL1, complete genomeIntegrase, catalytic region6e-1579.3
NC_009140:121107:1383811383811399251545Salmonella enterica enterica sv Newport str. SL254, completetransposase InsG for insertion sequence IS13531e-1478.2
NC_016860:4055117:4080318408031840818621545Salmonella enterica subsp. enterica serovar Typhimurium strInsG1e-1478.2
NC_008526:1973500:1982346198234619839951650Lactobacillus casei ATCC 334, complete genomeTransposase3e-1477
NC_017068:1480148:1489201148920114902561056Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative transposase6e-1476.3
NC_015563:1951368:1986783198678319883211539Delftia sp. Cs1-4 chromosome, complete genomeintegrase catalytic subunit3e-1373.9
NC_015136:1101725:1107959110795911094971539Burkholderia sp. CCGE1001 chromosome 1, complete sequenceintegrase catalytic subunit3e-1373.6
NC_010801:550270:5667645667645679781215Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu11 transposase9e-1372.4
NC_009254:74000:8357483574851121539Burkholderia vietnamiensis G4 chromosome 3, complete sequenceintegrase catalytic subunit1e-1271.6
NC_010087:460591:4653284653284668661539Burkholderia multivorans ATCC 17616 chromosome 3, completeIntegrase catalytic region1e-1271.6
NC_010087:319063:3568803568803584181539Burkholderia multivorans ATCC 17616 chromosome 3, completeIntegrase catalytic region1e-1271.6
NC_010508:1206498:1215312121531212168501539Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceIntegrase catalytic region3e-1270.9
NC_010515:1375091:1413849141384914153871539Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region1e-1168.6
NC_015737:1441086:1446438144643814478201383Clostridium sp. SY8519, complete genomehypothetical protein3e-1167.4
NC_015737:2691246:2764400276440027654461047Clostridium sp. SY8519, complete genomehypothetical protein5e-1166.2
NC_015737:2691246:2704589270458927056351047Clostridium sp. SY8519, complete genomehypothetical protein5e-1166.2
NC_010545:1729161:1741335174133517424411107Corynebacterium urealyticum DSM 7109, complete genometransposase for insertion sequence2e-1064.7
NC_010545:619346:6250626250626261681107Corynebacterium urealyticum DSM 7109, complete genometransposase for insertion sequence2e-1064.7
NC_017218:867550:877725877725878435711Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genome2e-1064.3
NC_009790:42112:6383063830649801151Escherichia coli E24377A plasmid pETEC_74, complete sequence3e-1063.9
NC_015152:2549756:2551426255142625529911566Spirochaeta sp. Buddy chromosome, complete genome4e-1063.5
NC_016786:1079000:109504310950431095855813Corynebacterium diphtheriae HC01 chromosome, complete genometransposase-like protein3e-0960.5
NC_009788:16360:365973659737115519Escherichia coli E24377A plasmid pETEC_73, complete sequence5e-0960.1
NC_016790:1319060:1326261132626113274871227Corynebacterium diphtheriae VA01 chromosome, complete genometransposase-like protein5e-0960.1
NC_016800:1243000:1275708127570812769341227Corynebacterium diphtheriae BH8 chromosome, complete genometransposase-like protein5e-0960.1
NC_016789:1805503:1820727182072718217791053Corynebacterium diphtheriae PW8 chromosome, complete genometransposase-like protein4e-0960.1
NC_016799:1268706:1302764130276413038161053Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein4e-0960.1
NC_002935:1237585:1273380127338012747591380Corynebacterium diphtheriae NCTC 13129, complete genomePutative transposase5e-0959.7
NC_002935:1378566:1382700138270013840791380Corynebacterium diphtheriae NCTC 13129, complete genomePutative transposase5e-0959.7
NC_016788:1214026:1246640124664012480191380Corynebacterium diphtheriae HC04 chromosome, complete genometransposase-like protein5e-0959.7
NC_016788:655175:6584896584896598681380Corynebacterium diphtheriae HC04 chromosome, complete genometransposase-like protein5e-0959.7
NC_016799:198091:2304592304592318381380Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein5e-0959.7
NC_016799:731849:7376387376387390171380Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein5e-0959.7
NC_016800:694750:6947506947506961291380Corynebacterium diphtheriae BH8 chromosome, complete genometransposase-like protein5e-0959.7
NC_016799:731849:7519187519187531471230Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein5e-0959.7
NC_014814:1397429:140003114000311400936906Mycobacterium sp. Spyr1 chromosome, complete genometransposase2e-0754.3
NC_009077:2308634:233873723387372339642906Mycobacterium sp. JLS, complete genomeIntegrase, catalytic region2e-0754.3
NC_009077:1687304:171742917174291718334906Mycobacterium sp. JLS, complete genomeIntegrase, catalytic region2e-0754.3
NC_014814:2588628:261269326126932613598906Mycobacterium sp. Spyr1 chromosome, complete genometransposase2e-0754.3
NC_014814:2588628:261399426139942614899906Mycobacterium sp. Spyr1 chromosome, complete genometransposase2e-0754.3
NC_014814:4809607:482646448264644827369906Mycobacterium sp. Spyr1 chromosome, complete genometransposase2e-0754.3
NC_014814:4235477:426512942651294266034906Mycobacterium sp. Spyr1 chromosome, complete genometransposase2e-0754.3
NC_009338:4913510:491848249184824919387906Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_009338:4913510:493251949325194933424906Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_009338:4913510:494024249402424941147906Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_009338:603663:603663603663604568906Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_009338:630130:641095641095642000906Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_012962:1661683:169454216945421695315774Photorhabdus asymbiotica, complete genomeyada protein3e-0753.9
NC_012962:4591295:460932746093274610100774Photorhabdus asymbiotica, complete genomeputative transposase for insertion sequence element is1503e-0753.9
NC_011593:533884:5682865682865696411356Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,Integrase, catalytic region3e-0753.9
NC_017219:538864:5680795680795694341356Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative transposase3e-0753.9
NC_014814:4809607:483085348308534831698846Mycobacterium sp. Spyr1 chromosome, complete genometransposase3e-0753.9
NC_016786:1359064:139668613966861397534849Corynebacterium diphtheriae HC01 chromosome, complete genometransposase-like protein5e-0753.1
NC_016782:1385800:139671613967161397564849Corynebacterium diphtheriae 241 chromosome, complete genometransposase-like protein5e-0753.1
NC_011751:1714131:172976817297681730490723Escherichia coli UMN026 chromosome, complete genometransposase ORF B, IS3 family, IS150 group7e-0752.8
NC_011750:2928990:296017829601782960900723Escherichia coli IAI39 chromosome, complete genometransposase ORF B, IS3 family, IS150 group7e-0752.8
NC_012471:1752483:176751317675131768316804Streptococcus equi subsp. equi 4047, complete genometransposase2e-0651.6
NC_012471:719000:735868735868736671804Streptococcus equi subsp. equi 4047, complete genometransposase2e-0651.6
NC_012471:1197534:120547912054791206282804Streptococcus equi subsp. equi 4047, complete genometransposase2e-0651.6
NC_011134:1360122:138372513837251384528804Streptococcus equi subsp. zooepidemicus str. MGCS10565, completetransposase IS861 orfB2e-0651.6
NC_011134:311360:315261315261316064804Streptococcus equi subsp. zooepidemicus str. MGCS10565, completetransposase IS861 orfB2e-0651.6
NC_012471:781063:786747786747787550804Streptococcus equi subsp. equi 4047, complete genometransposase2e-0651.6
NC_007296:1073784:107433810743381075144807Streptococcus pyogenes MGAS6180, complete genometransposase1e-0651.6
NC_012471:2058592:206229620622962063162867Streptococcus equi subsp. equi 4047, complete genometransposase2e-0651.2
NC_012470:853561:872834872834873637804Streptococcus equi subsp. zooepidemicus, complete genometransposase2e-0651.2
NC_004337:3590323:369176736917673692618852Shigella flexneri 2a str. 301, complete genomeIS150 ORF28e-0649.3
NC_008258:3581583:359885135988513599702852Shigella flexneri 5 str. 8401, complete genomeIS150 ORF28e-0649.3