Pre_GI: BLASTP Hits

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Query: NC_007607:87000:100659 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 100659, End: 101351, Length: 693

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:1033061033061082044899Shigella boydii Sb227 plasmid pSB4_227, complete sequenceoriT nicking and unwinding protein, fragment7e-109392
NC_017319:192482:2005052005052039543450Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceOriT nicking and unwinding protein1e-108392
NC_004851:191709:2005772005772040773501Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceoriT nicking and unwinding protein1e-108392
NC_010660:175200:1832651832651882354971Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-108392
NC_007414:56508:8899288992902901299Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequenceDNA helicase1e-103375
NC_007385:157516:175043175043175879837Shigella sonnei Ss046 plasmid pSS_046, complete sequenceoriT nicking and unwinding protein, fragment6e-103373
NC_009378:106193:1061931061931114335241Yersinia pestis Pestoides F plasmid MT, complete sequenceconjugal transfer nickase/helicase TraI3e-47187
NC_016846:24500:4675446754520125259Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,conjugal transfer nickase/helicase TraI2e-44178