Pre_GI: BLASTP Hits

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Query: NC_007384:3741708:3756689 Shigella sonnei Ss046, complete genome

Start: 3756689, End: 3757366, Length: 678

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:4566779:4571679457167945726801002Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein5e-125446
CU928160:3709081:3714883371488337158961014Escherichia coli IAI1 chromosome, complete genomeputative membrane protein6e-125446
NC_011741:3709081:3714883371488337158961014Escherichia coli IAI1 chromosome, complete genomehypothetical protein6e-125446
NC_004337:3590323:362801236280123628968957Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-125446
NC_004337:3621985:362801236280123628968957Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-125446
NC_004741:4132056:414488041448804145836957Shigella flexneri 2a str. 2457T, complete genomehypothetical protein5e-125446
NC_008258:3581583:358826735882673589229963Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-125446
NC_013364:4306000:430912843091284310090963Escherichia coli O111:H- str. 11128, complete genomehypothetical protein5e-125446
NC_011415:3887997:3896056389605638970571002Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-125446
NC_017328:3655876:366286236628623663824963Shigella flexneri 2002017 chromosome, complete genomeputative membrane transport protein1e-124445
CP002185:3822470:3846689384668938476901002Escherichia coli W, complete genomeconserved hypothetical protein7e-124442
NC_009801:3956917:3962721396272139637221002Escherichia coli E24377A, complete genomeputative permease7e-124442
CP002516:246767:2583832583832593841002Escherichia coli KO11, complete genomepermease7e-124442
AP010958:4313462:4318121431812143191221002Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein7e-124442
NC_013353:4313462:4318121431812143191221002Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-124442
NC_016902:246767:2583832583832593841002Escherichia coli KO11FL chromosome, complete genomepermease7e-124442
NC_016822:3946500:395189639518963952567672Shigella sonnei 53G, complete genomehypothetical protein4e-123440
NC_010498:3838419:3862537386253738635381002Escherichia coli SMS-3-5, complete genomeputative permease4e-120430
CU928145:3983432:4015995401599540170201026Escherichia coli 55989 chromosome, complete genomeputative membrane protein1e-118425
NC_011748:3983432:4015995401599540170201026Escherichia coli 55989, complete genomehypothetical protein1e-118425
NC_014972:1407632:1435174143517414362711098Desulfobulbus propionicus DSM 2032 chromosome, complete genomepermease2e-56218
NC_007722:2172000:218398921839892184381393Erythrobacter litoralis HTCC2594, complete genomeputative permease2e-39162
NC_003912:1629937:162993716299371630884948Campylobacter jejuni RM1221, complete genomepermease, putative2e-27122
NC_017281:1533454:153345415334541534401948Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomemembrane protein2e-27122
NC_008787:1463696:146524714652471465888642Campylobacter jejuni subsp. jejuni 81-176, complete genomehypothetical protein3e-27121
NC_002163:1471517:149032814903281491152825Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein6e-27120
NC_018867:179975:1995971995972007121116Dehalobacter sp. CF chromosome, complete genomeTransporter8e-27120
NC_018866:108812:1320021320021331171116Dehalobacter sp. DCA chromosome, complete genomeTransporter8e-27120
NC_007907:5185510:5229711522971152307421032Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-23107
NC_008554:4699577:471204947120494712951903Syntrophobacter fumaroxidans MPOB, complete genomepermease1e-21103
NC_019962:1909103:196271919627191963675957Natrinema pellirubrum DSM 15624, complete genomeputative permease2e-21102
NC_011979:3880488:388504938850493885729681Geobacter sp. FRC-32, complete genome1e-1996.7
NC_017192:276187:299253299253300215963Arcobacter sp. L, complete genomehypothetical protein1e-1996.3
NC_006510:591339:615873615873616415543Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1788.6
NC_016593:596500:622962622962623372411Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein3e-1788.6
NC_014218:1689002:1689002168900216901801179Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomepermease3e-1788.6
NC_018012:1789028:1802946180294618039921047Thiocystis violascens DSM 198 chromosome, complete genomeputative permease5e-1787.8
NC_018604:1137797:1156011115601111570151005Brachyspira pilosicoli WesB complete genomeputative permease1e-1686.7
NC_014330:313813:3138133138133148171005Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative permease1e-1686.7
NC_018607:1648607:1650167165016716511711005Brachyspira pilosicoli B2904 chromosome, complete genomepermease2e-1685.5
NC_014910:2779573:2792730279273027937851056Alicycliphilus denitrificans BC chromosome, complete genomepermease3e-1685.1
NC_009092:521519:5435185435185445341017Shewanella loihica PV-4, complete genomepermease4e-1684.7
NC_017059:2771085:279943327994332800398966Rhodospirillum photometricum DSM 122, complete genomePermease2e-1582.8
NC_014151:4021394:4043941404394140449901050Cellulomonas flavigena DSM 20109 chromosome, complete genomepermease2e-1582.4
NC_014376:2964731:2972321297232129733341014Clostridium saccharolyticum WM1 chromosome, complete genomepermease4e-1581.6
NC_008781:2981868:2986274298627429873201047Polaromonas naphthalenivorans CJ2, complete genomepermease5e-1581.3
NC_014972:1407632:1416751141675114178451095Desulfobulbus propionicus DSM 2032 chromosome, complete genomepermease1e-1480.1
NC_009714:292470:303208303208304203996Campylobacter hominis ATCC BAA-381, complete genomepermease2e-1479.3
NC_015152:1230995:1246285124628512472891005Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein2e-1479
NC_007907:5297477:5309204530920453102081005Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1377
NC_010816:1274702:1283050128305012840631014Bifidobacterium longum DJO10A, complete genomeHypothetical permease1e-1376.6
NC_015417:39633:479664796648928963Clostridium botulinum BKT015925 plasmid p1BKT015925, completepermease1e-1376.6
NC_007519:2773000:2779428277942827805191092Desulfovibrio alaskensis G20 chromosome, complete genomepermease-like protein4e-1375.1
NC_010730:952574:970233970233971192960Sulfurihydrogenibium sp. YO3AOP1, complete genomepermease6e-1374.3
NC_011830:1288984:1316848131684813178521005Desulfitobacterium hafniense DCB-2, complete genomepermease3e-1272
NC_002937:1706000:1723708172370817248231116Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completepermease, putative6e-1271.2
NC_008751:1736512:1743434174343417445491116Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomepermease6e-1270.9
NC_009975:688667:688667688667689623957Methanococcus maripaludis C6, complete genomepermease3e-1168.9
NC_015732:982774:9934789934789947491272Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein6e-1064.3
NC_015850:548821:570653570653571606954Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein2e-0859.3
NC_014377:1985714:1990121199012119912931173Thermosediminibacter oceani DSM 16646 chromosome, complete genomepermease4e-0651.6
NC_016791:2215164:221516422151642216060897Clostridium sp. BNL1100 chromosome, complete genomeputative permease9e-0650.4