Pre_GI: BLASTP Hits

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Query: NC_007384:307013:325878 Shigella sonnei Ss046, complete genome

Start: 325878, End: 326759, Length: 882

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010473:1384000:138625413862541387201948Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional activator, 3HPP-binding7e-157553
NC_016602:2037162:205856720585672059385819Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceDNA-binding protein transcriptional activator7e-100363
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-1477.8
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator1e-1273.9
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family7e-1271.2
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-1170.9
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator1e-1170.9
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator2e-1170.1
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family2e-1170.1
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI2e-1169.7
NC_007951:1711223:171944717194471720283837Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family3e-1169.3
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator6e-1168.2
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family2e-1067
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator2e-1067
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-1066.6
NC_010002:1879220:195224719522471953035789Delftia acidovorans SPH-1, complete genometranscriptional regulator, IclR family2e-1066.6
NC_013929:5850599:5866255586625558680181764Streptomyces scabiei 87.22 chromosome, complete genomeIclR family transcriptional regulator2e-1066.2
NC_007948:360199:390220390220391011792Polaromonas sp. JS666, complete genometranscriptional regulator, IclR family3e-1065.9
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator6e-1065.1
NC_007963:317291:335808335808336599792Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family2e-0963.5
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-0963.2
NC_015677:1460000:147130114713011472017717Ramlibacter tataouinensis TTB310 chromosome, complete genomeIclR family transcriptional regulator2e-0963.2
NC_011001:163813:181278181278182174897Burkholderia cenocepacia J2315 chromosome 2, complete sequencetranscriptional regulator KdgR4e-0962.4
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21376e-0961.6
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family6e-0961.6
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family7e-0961.2
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator7e-0961.2
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family9e-0961.2
NC_011740:1494796:151502815150281515831804Escherichia fergusonii ATCC 35469, complete genomeputative transcriptional regulator protein1e-0860.8
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family1e-0860.8
NC_014931:5573942:559204755920475592841795Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, IclR family2e-0859.7
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family3e-0859.7
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass3e-0859.3
NC_008786:2809985:2829239282923928311461908Verminephrobacter eiseniae EF01-2, complete genomeregulatory proteins, IclR3e-0859.3
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator4e-0858.9
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator4e-0858.9
NC_014623:1633889:163496616349661635784819Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscriptional regulator4e-0858.9
NC_015410:3003417:301342030134203014208789Pseudomonas mendocina NK-01 chromosome, complete genomeIclR family transcriptional regulator6e-0858.2
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR1e-0757.8
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family1e-0757.4
NC_008786:492363:510295510295511062768Verminephrobacter eiseniae EF01-2, complete genome1e-0757.4
NC_003305:1743939:174486317448631745633771Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, IclR family3e-0756.2
NC_003063:304962:329125329125329955831Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-0756.2
NC_017986:5605197:563030556303055631078774Pseudomonas putida ND6 chromosome, complete genomeregulatory protein IclR3e-0756.2
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family4e-0755.8
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-0755.5
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator4e-0755.5
NC_018691:198909:215686215686216465780Alcanivorax dieselolei B5 chromosome, complete genomeBeta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family1e-0653.9
NC_012912:4071859:409679440967944097600807Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family1e-0653.9
NC_015067:2136048:213784721378472138722876Bifidobacterium longum subsp. longum JCM 1217, complete genometranscriptional regulator2e-0653.1
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-0653.1
NC_014500:2589089:259686025968602597651792Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein KdgR3e-0652.8
NC_016943:1560000:157046615704661571323858Blastococcus saxobsidens DD2, complete genomeputative transcription regulator, IclR family4e-0652
NC_012521:148886:165731165731166522792Rhodococcus opacus B4 plasmid pROB02, complete sequenceputative IclR family transcriptional regulator5e-0652
NC_010473:247429:2617322617322639362205Escherichia coli str. K-12 substr. DH10B, complete genome5e-0652
NC_014656:1829336:186474318647431865618876Bifidobacterium longum subsp. longum BBMN68 chromosome, completeiclr-type transcriptional regulator9e-0651.2
NC_015052:2181514:218331321833132184188876Bifidobacterium longum subsp. infantis 157F, complete genometranscriptional regulator9e-0651.2