Pre_GI: BLASTP Hits

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Query: NC_007384:2007467:2024061 Shigella sonnei Ss046, complete genome

Start: 2024061, End: 2024453, Length: 393

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007606:1209132:121494612149461215338393Shigella dysenteriae Sd197, complete genomehypothetical protein6e-70262
NC_013364:1596278:160394716039471604243297Escherichia coli O111:H- str. 11128, complete genomeputative enzyme4e-51199
NC_010473:1384000:139798913979891398285297Escherichia coli str. K-12 substr. DH10B, complete genomepredicted enzyme4e-51199
NC_009801:1392696:139943013994301399726297Escherichia coli E24377A, complete genomeYciL domain protein5e-51199
NC_013850:2103469:212763221276322127928297Klebsiella variicola At-22 chromosome, complete genomeYCII-related protein1e-45181
NC_011283:2185462:219408221940822194378297Klebsiella pneumoniae 342 chromosome, complete genomeYciI-like protein1e-45181
NC_020063:2011019:201407420140742014370297Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein1e-45181
NC_007712:2287053:228973322897332290119387Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein4e-44176
NC_012779:1629731:163963516396351639928294Edwardsiella ictaluri 93-146, complete genomehypothetical protein9e-38155
NC_008149:1842500:187744818774481877744297Yersinia pestis Nepal516, complete genomehypothetical protein3e-36150
NC_004088:2227278:224506022450602245356297Yersinia pestis KIM, complete genomehypothetical protein3e-36150
NC_008150:1705152:174078717407871741083297Yersinia pestis Antiqua, complete genomehypothetical protein3e-36150
NC_009381:1064227:106774910677491068045297Yersinia pestis Pestoides F chromosome, complete genomeYciI-like protein3e-36150
NC_009708:2245586:224976722497672250063297Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeYciI-like protein3e-36150
NC_017168:3290380:329328032932803293576297Yersinia pestis A1122 chromosome, complete genomeYciI-like protein3e-36150
NC_017265:1765399:178396117839611784257297Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein3e-36150
NC_013960:2366910:238629323862932386592300Nitrosococcus halophilus Nc4 chromosome, complete genomeYCII-related protein7e-31132
NC_010465:2282874:228710622871062287351246Yersinia pseudotuberculosis YPIII, complete genomeYCII-related3e-30130
NC_020541:1786500:181991718199171820219303Rhodanobacter sp. 2APBS1, complete genomehypothetical protein3e-30130
NC_010410:513298:535589535589535891303Acinetobacter baumannii AYE, complete genomehypothetical protein9e-23105
NC_014166:2621500:262466026246602624947288Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeYCII-related protein1e-0858.2
NC_010170:1551923:156968315696831569988306Bordetella petrii, complete genomehypothetical protein1e-0755.5
NC_017192:2548933:255006925500692550356288Arcobacter sp. L, complete genomehypothetical protein1e-0652
NC_009922:1:224642246422763300Alkaliphilus oremlandii OhILAs, complete genomeYCII-related1e-0652