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Query: NC_005126:1265071:1267983 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1267983, End: 1268267, Length: 285

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008563:3119284:3137704313770431392451542Escherichia coli APEC O1, complete genomeputative transposase for ISEc123e-23106
NC_014228:1712339:1722894172289417244381545Xenorhabdus nematophila ATCC 19061, complete genometransposase2e-1374.3
NC_014228:3534378:3551654355165435531981545Xenorhabdus nematophila ATCC 19061, complete genometransposase2e-1374.3
NC_012587:2298324:2314945231494523164951551Rhizobium sp. NGR234, complete genomeputative transposase number 1 for insertion sequence NGRIS-3g6e-1372.8
NC_000914:198000:2184582184582200081551Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceY4kJ6e-1372.8
NC_012586:922095:9243909243909259401551Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase number 1 for insertion sequence NGRIS-3e6e-1372.8
NC_015633:2801321:2816080281608028176121533Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase4e-1166.6
NC_009784:1231791:1231791123179112333231533Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein4e-1166.6
NC_009349:78000:8019980199817401542Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completetransposase subunit 11e-1065.1
NC_008577:1455000:1463938146393814654791542Shewanella sp. ANA-3 chromosome 1, complete sequenceIntegrase, catalytic region1e-1065.1
NC_009348:1064664:1077134107713410786751542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_009348:47974:6152661526630671542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_009348:2125698:2145116214511621466571542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_009348:1475955:1530946153094615324871542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_009348:3029963:3051855305185530533961542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_009350:137645:1393901393901409311542Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, completetransposase subunit 11e-1064.7
NC_009348:1347500:1358541135854113600821542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1064.7
NC_012691:1743038:1773360177336017749011542Tolumonas auensis DSM 9187, complete genomeIntegrase catalytic region3e-1063.9
NC_004463:1872537:1875114187511418766341521Bradyrhizobium japonicum USDA 110, complete genomeputative transposase4e-1063.5
NC_015554:4724245:4743404474340447444231020Alteromonas sp. SN2 chromosome, complete genomeintegrase catalytic subunit4e-1063.5
NC_007384:1086025:1092084109208410936191536Shigella sonnei Ss046, complete genomeputative transposase4e-1063.2
NC_017249:8427163:8448059844805984494171359Bradyrhizobium japonicum USDA 6, complete genometransposase5e-1063.2
NC_017249:8221992:8271347827134782727051359Bradyrhizobium japonicum USDA 6, complete genometransposase5e-1063.2
NC_009434:3611738:3668435366843536700931659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase5e-1063.2
NC_009434:695582:7513237513237529811659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase5e-1063.2
NC_009434:1580205:1585113158511315867711659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase5e-1063.2
NC_007384:1763375:1767851176785117693861536Shigella sonnei Ss046, complete genomeputative transposase4e-1063.2
NC_016822:1839739:1845837184583718473721536Shigella sonnei 53G, complete genometransposase4e-1063.2
NC_016822:2940000:2957005295700529585401536Shigella sonnei 53G, complete genometransposase4e-1063.2
NC_015554:4824000:4826991482699148284541464Alteromonas sp. SN2 chromosome, complete genomeintegrase catalytic subunit4e-1063.2
NC_016815:844350:8628668628668644161551Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceTransposase for insertion sequence IS1326/IS13534e-1063.2
NC_016815:1543308:1543308154330815448581551Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceTransposase for insertion sequence IS1326/IS13534e-1063.2
NC_016812:4246542:4251400425140042529501551Sinorhizobium fredii HH103, complete genomeputative transposase for insertion sequence IS4084e-1063.2
NC_016812:258500:2692812692812708311551Sinorhizobium fredii HH103, complete genomeputative transposase for insertion sequence IS4084e-1063.2
NC_016822:267758:2755732755732771081536Shigella sonnei 53G, complete genometransposase4e-1063.2
NC_016812:3641786:3660555366055536621081554Sinorhizobium fredii HH103, complete genomeputative transposase for insertion sequence IS11629e-1062.4
NC_008782:1917634:1939904193990419414271524Acidovorax sp. JS42, complete genomeIntegrase, catalytic region1e-0962
NC_016812:3641786:3663067366306736646171551Sinorhizobium fredii HH103, complete genomeputative transposase y4uI2e-0961.6
NC_017325:967598:9816259816259831751551Sinorhizobium meliloti SM11 chromosome, complete genomeTRm23a transposase1e-0961.6
NC_006513:38818:3881838818403771560Azoarcus sp. EbN1, complete genometransposase2e-0960.8
NC_015851:10915:1168211682129471266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0959.7
NC_015851:89006:1122281122281134931266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0959.7
NC_015851:181721:1979011979011991661266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0959.7
NC_015186:535727:5525885525885541051518Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element6e-0959.7
NC_008740:1484531:1502877150287715044181542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0959.7
NC_010086:1816378:1846815184681518483711557Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region7e-0959.3
NC_010801:550270:5882805882805898361557Burkholderia multivorans ATCC 17616 chromosome 3, completeIS408a transposase7e-0959.3
NC_010087:319063:3350223350223365781557Burkholderia multivorans ATCC 17616 chromosome 3, completeIntegrase catalytic region7e-0959.3
NC_010805:575709:6269336269336284891557Burkholderia multivorans ATCC 17616 chromosome 2, completeIS408a transposase7e-0959.3
NC_009255:1105786:1127023112702311285791557Burkholderia vietnamiensis G4 chromosome 2, complete sequenceintegrase catalytic subunit7e-0959.3
NC_009428:1827352:1854220185422018557521533Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeintegrase catalytic subunit1e-0858.9
NC_007951:2904644:2927207292720729287601554Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase9e-0958.9
NC_007645:6461267:6474373647437364759141542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0958.9
NC_007645:5747721:5749500574950057510411542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0958.9
NC_020304:1222000:1242238124223812437911554Desulfocapsa sulfexigens DSM 10523, complete genometransposase9e-0958.9
NC_020304:752012:7688947688947704471554Desulfocapsa sulfexigens DSM 10523, complete genometransposase9e-0958.9
NC_007645:6350079:6367193636719363687341542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0958.9
NC_008740:3520500:3521536352153635230801545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_008740:683081:6830816830816846251545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_008740:443274:4665664665664681101545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_010529:296500:2972952972952987161422Cupriavidus taiwanensis plasmid pRALTA, complete sequencetransposase, IS21 family3e-0857.4
NC_010086:1907959:1918168191816819197181551Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region3e-0857.4
NC_010804:996837:1021950102195010235001551Burkholderia multivorans ATCC 17616 chromosome 1, completeISBmu3 transposase3e-0857.4
NC_010805:530876:5555865555865571361551Burkholderia multivorans ATCC 17616 chromosome 2, completeISBmu3 transposase3e-0857.4
NC_010084:2484000:2501273250127325028231551Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase catalytic region3e-0857.4
NC_008750:1253354:1263607126360712651481542Shewanella sp. W3-18-1, complete genomeIntegrase, catalytic region3e-0857
NC_008738:1:1630116301178421542Marinobacter aquaeolei VT8 plasmid pMAQU01, complete sequenceIntegrase, catalytic region3e-0857
NC_008740:4109000:4109567410956741111081542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region3e-0857
NC_008740:3520500:3531509353150935330501542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region3e-0857
NC_008740:2989856:2990543299054329920841542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region4e-0857
NC_016589:183432:195653195653196540888Burkholderia sp. YI23 chromosome 1, complete sequenceputative transposase for insertion sequence5e-0856.6
NC_008740:1815743:1826754182675418282981545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region4e-0856.6
NC_008740:220642:2331842331842347281545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region4e-0856.6
NC_015850:2147682:2147682214768221492231542Acidithiobacillus caldus SM-1 chromosome, complete genomeintegrase catalytic subunit6e-0856.2
NC_008536:9538891:9554722955472295560891368Solibacter usitatus Ellin6076, complete genomeIntegrase, catalytic region7e-0855.8
NC_006177:46745:6530365303664271125Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit1e-0755.5
NC_006177:2883476:2894345289434528958711527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit1e-0755.1
NC_006177:280234:3076823076823092081527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit1e-0755.1
NC_012660:2045398:2061851206185120634311581Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase subunit A2e-0754.7
NC_009434:3611738:3683250368325036847641515Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase3e-0753.9
NC_007948:1972290:1997460199746019989981539Polaromonas sp. JS666, complete genomeIntegrase, catalytic region4e-0753.5
NC_008639:2545107:2566515256651525680891575Chlorobium phaeobacteroides DSM 266, complete genomeIntegrase, catalytic region5e-0753.1
NC_015740:2614317:2635592263559226371061515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_015740:3631326:3654574365457436560881515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_015740:4072415:4078101407810140796151515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_015740:2407500:2438489243848924400031515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_015740:3631326:3632727363272736342411515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_015740:141910:1566021566021581161515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit4e-0753.1
NC_009434:608765:6498756498756513891515Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase8e-0752.4
NC_007512:2024880:2043341204334120449211581Pelodictyon luteolum DSM 273, complete genometransposase subunit9e-0752.4
NC_010831:40000:5364553645552101566Chlorobium phaeobacteroides BS1, complete genomeIntegrase catalytic region1e-0652
NC_014394:738365:7499867499867515061521Gallionella capsiferriformans ES-2 chromosome, complete genomeIntegrase catalytic region1e-0652
NC_008095:2497842:2505965250596525075031539Myxococcus xanthus DK 1622, complete genometransposase, IS21 family2e-0650.8
NC_008095:4189082:4213467421346742150051539Myxococcus xanthus DK 1622, complete genometransposase, IS21 family2e-0650.8
NC_012792:547967:5632535632535647941542Variovorax paradoxus S110 chromosome 2, complete genomeIntegrase catalytic region4e-0650.1