Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3079305 Shigella flexneri 2a str. 2457T, complete genome

Start: 3079305, End: 3081425, Length: 2121

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:3127175312717531303033129Shigella flexneri 2002017 chromosome, complete genomeOuter membrane fluffing protein01360
NC_004337:3049118:3087470308747030905983129Shigella flexneri 2a str. 301, complete genomeouter membrane fluffing protein01360
NC_008253:334467:3525863525863557143129Escherichia coli 536, complete genomeputative autotransporter01319
NC_004431:3409389:3491808349180834949363129Escherichia coli CFT073, complete genomeAntigen 43 precursor01288
NC_004431:1211000:1225454122545412287293276Escherichia coli CFT073, complete genomeAntigen 43 precursor01267
CP002797:4656327:4661666466166646644522787Escherichia coli NA114, complete genomePutative antigen 43 precursor0933
NC_013361:3313284:3325633332563333284792847Escherichia coli O26:H11 str. 11368 chromosome, complete genomeAidA-I adhesin0826
NC_007946:1119000:1133653113365311364992847Escherichia coli UTI89, complete genomeputative autotransporter0819
NC_013716:5201097:5224334522433452271802847Citrobacter rodentium ICC168, complete genomeputative adhesin autotransporter0818
NC_008253:3161311:3168808316880831716542847Escherichia coli 536, complete genomeputative autotransporter0818
NC_013592:3263005:3266698326669832699253228Dickeya dadantii Ech586, complete genomeouter membrane autotransporter barrel domain protein0748
NC_014618:2788533:2800332280033228046994368Enterobacter cloacae SCF1 chromosome, complete genomeouter membrane autotransporter barrel domain-containing protein2e-1894.4
NC_013717:5726:69396939117204782Citrobacter rodentium ICC168 plasmid pCROD1, complete sequenceputative autotransporter adhesin5e-1686.7
NC_003317:48375:5378953789579134125Brucella melitensis 16M chromosome I, complete sequenceEXTRACELLULAR SERINE PROTEASE1e-1068.6
NC_006932:1939145:1951994195199419567694776Brucella abortus biovar 1 str. 9-941 chromosome I, complete2e-1068.2
NC_009425:1:1047210472152564785Enterobacter sp. 638 plasmid pENTE01, complete sequenceouter membrane autotransporter2e-1068.2
NC_013119:1932402:1944264194426419490394776Brucella microti CCM 4915 chromosome 1, complete sequenceouter membrane autotransporter2e-1068.2
NC_017251:1923391:1935250193525019400314782Brucella suis 1330 chromosome I, complete genomeouter membrane autotransporter2e-1067.8
NC_004310:1923404:1935263193526319400444782Brucella suis 1330 chromosome I, complete sequenceouter membrane autotransporter2e-1067.8
NC_016795:456110:4615084615084635232016Brucella abortus A13334 chromosome 1, complete sequenceouter membrane autotransporter3e-1067.8
NC_007618:1937261:1951873195187319538882016Brucella melitensis biovar Abortus 2308 chromosome I, complete3e-1067.8
NC_010742:1938428:1953196195319619550551860Brucella abortus S19 chromosome 1, complete sequenceouter membrane autotransporter3e-1067.4
NC_016778:1216739:1222168122216812239341767Brucella canis HSK A52141 chromosome 1, complete sequenceouter membrane autotransporter5e-1067
NC_017244:1941974:1956910195691019586071698Brucella melitensis M28 chromosome chromosome 1, complete sequenceouter membrane autotransporter1e-0965.5
NC_017246:1942293:1957229195722919589261698Brucella melitensis M5-90 chromosome chromosome I, completeouter membrane autotransporter barrel domain-containing protein1e-0965.5
NC_017248:1933357:1948294194829419499911698Brucella melitensis NI chromosome chromosome I, complete sequenceExtracellular serine protease1e-0965.5
NC_012751:275336:2828972828972850412145Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completetype V secretory pathway, adhesin5e-0963.5
NC_013941:1460144:1475857147585714791353279Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeATP-binding component of a transporter5e-0963.5
NC_011751:3048490:3080198308019830849014704Escherichia coli UMN026 chromosome, complete genomeadhesin-like autotransporter1e-0862.4
NC_002695:3468873:3500324350032435050394716Escherichia coli O157:H7 str. Sakai, complete genomeputative ATP-binding component of a transport system2e-0861.6
NC_011353:3573641:3604560360456036092754716Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-0861.6
NC_010498:2847359:2851680285168028563774698Escherichia coli SMS-3-5, complete genomehypothetical protein2e-0861.6
NC_002655:3538656:3567614356761435722004587Escherichia coli O157:H7 EDL933, complete genomeputative ATP-binding component of a transport system3e-0861.2
AC_000091:2747520:2776802277680227813824581Escherichia coli W3110 DNA, complete genomeadhesin-like autotransporter3e-0861.2
NC_000913:2746886:2776168277616827807484581Escherichia coli K12, complete genomeadhesin-like autotransporter3e-0861.2
NC_012759:2633949:2661980266198026665604581Escherichia coli BW2952 chromosome, complete genomeadhesin-like autotransporter3e-0861.2
NC_013716:2898434:2911789291178929146982910Citrobacter rodentium ICC168, complete genomeputative outer membrane autotransporter3e-0861.2
NC_010468:1130000:1141442114144211460224581Escherichia coli ATCC 8739, complete genomeouter membrane autotransporter barrel domain protein3e-0861.2
NC_013008:3525428:3559285355928535638714587Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeadhesin3e-0861.2
CU928160:2818750:2823426282342628252491824Escherichia coli IAI1 chromosome, complete genomefragment of adhesin-like autotransporter (part 2)5e-0860.1
NC_011741:2818750:2823426282342628252491824Escherichia coli IAI1 chromosome, complete genome5e-0860.1
NC_011750:1978801:1980462198046219831102649Escherichia coli IAI39 chromosome, complete genomeputative outer membrane autotransporter barrel, putative pectin lyase fold5e-0860.1
NC_010498:1995500:1999462199946220017832322Escherichia coli SMS-3-5, complete genomeautotransporter (AT) family porin9e-0859.3
NC_011415:1273551:1287653128765312899742322Escherichia coli SE11 chromosome, complete genomeputative autotransporter1e-0758.5
NC_013361:1634226:1646955164695516492762322Escherichia coli O26:H11 str. 11368 chromosome, complete genomeAidA-I adhesin2e-0758.5
CU928160:1232510:1246613124661312489342322Escherichia coli IAI1 chromosome, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold2e-0758.2
NC_011741:1232510:1246613124661312489342322Escherichia coli IAI1 chromosome, complete genomeputative outer membrane autotransporter barrel pectin lyase fold2e-0758.2
NC_016816:3333000:3357378335737833603352958Pantoea ananatis LMG 5342, complete genomeType V secretory pathway, adhesin AidA5e-0757
NC_011751:1446073:1466883146688314685321650Escherichia coli UMN026 chromosome, complete genomehypothetical protein5e-0757
NC_013364:1477248:1514816151481615165671752Escherichia coli O111:H- str. 11128, complete genome8e-0756.2
AP010958:1339263:1353366135336613556872322Escherichia coli O103:H2 str. 12009 DNA, complete genomeAidA-I adhesin-like protein8e-0756.2
CP002185:1298675:1312778131277813150992322Escherichia coli W, complete genome8e-0756.2
NC_013353:1339263:1353366135336613556872322Escherichia coli O103:H2 str. 12009, complete genomeAidA-I adhesin-like protein8e-0756.2
NC_010658:1193225:120818312081831208812630Shigella boydii CDC 3083-94, complete genome9e-0755.8
CU928145:1300863:1315755131575513180642310Escherichia coli 55989 chromosome, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold2e-0655.1
NC_011748:1300863:1315755131575513180642310Escherichia coli 55989, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold2e-0655.1
NC_010468:2699000:2704151270415127067712621Escherichia coli ATCC 8739, complete genome8e-0653.1
NC_000913:1188999:1218824121882412214452622Escherichia coli K12, complete genome9e-0652.8
NC_010473:1245284:1259065125906512616862622Escherichia coli str. K-12 substr. DH10B, complete genome9e-0652.8