Pre_GI: BLASTP Hits

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Query: NC_004631:2842453:2853946 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2853946, End: 2854188, Length: 243

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:2829767:284124528412452841487243Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-40164
NC_003198:2856596:286808928680892868331243Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity 1 island effector protein2e-40164
NC_011149:2912219:292460329246032924845243Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus needle protein7e-40162
NC_010102:2967464:297905729790572979299243Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-39159
NC_011147:2814664:282615728261572826399243Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein1e-38157
NC_006511:2819128:283062128306212830863243Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity 1 island effector protein1e-38157
NC_011274:2881306:289153928915392891781243Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity 1 island effector protein1e-37154
NC_011205:3050235:306046630604663060708243Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus needle protein1e-37154
NC_011094:2913500:292328129232812923523243Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus needle protein1e-37154
NC_003197:3005842:301607530160753016317243Salmonella typhimurium LT2, complete genomeneedle complex major subunit1e-37154
NC_006905:2960260:296960229696022969844243Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein; cytoplasmic1e-37154
NC_011080:2982346:299257929925792992821243Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus needle protein1e-37154
NC_011083:2980356:299058929905892990831243Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus needle protein1e-37154
NC_011294:2890500:290073429007342900976243Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity 1 island effector protein1e-37154
NC_012125:2938519:294998629499862950228243Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity 1 island effector protein1e-37154
NC_017046:3027161:303739130373913037633243Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system apparatus1e-37154
NC_016863:2974333:298456529845652984807243Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex major subunit1e-37154
NC_016860:3029272:303950530395053039747243Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein1e-37154
NC_016857:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex major subunit1e-37154
NC_016856:3026426:303631230363123036554243Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex major subunit1e-37154
NC_016831:2867766:287799828779982878240243Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity 1 island effector protein1e-37154
NC_016810:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system apparatus1e-37154
NC_010067:84093:981809818098419240Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-35147
NC_015761:2726000:273630427363042736546243Salmonella bongori NCTC 12419, complete genomepathogenicity 1 island effector protein4e-34142
NC_002695:3702344:372028737202873720526240Escherichia coli O157:H7 str. Sakai, complete genomeEprI5e-23106
NC_011751:3285646:330451233045123304751240Escherichia coli UMN026 chromosome, complete genometype III secretion system needle protein5e-23106
NC_011353:3805819:382468438246843824923240Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus needle protein5e-23106
NC_013008:3761467:377941037794103779649240Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein EprI5e-23106
NC_009800:2995958:301696830169683017183216Escherichia coli HS, complete genometype III secretion apparatus needle protein4e-2096.7
NC_010468:906957:921841921841922056216Escherichia coli ATCC 8739, complete genometype III secretion system needle protein4e-2096.7
NC_013961:851044:860691860691860960270Erwinia amylovora, complete genomeType III secretion system protein PrgI1e-1995.1
NC_013971:1660144:167353316735331673805273Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein4e-1683.2
NC_013722:1689125:171186217118621712155294Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein2e-1374.3
NC_010694:2138000:216761821676182167824207Erwinia tasmaniensis, complete genomeType III secretion apparatus1e-1272
NC_012214:2221702:225498622549862255159174Erwinia pyrifoliae Ep1/96, complete genomeCell invasion protein-cytoplasmic/type III secretion system needle protein4e-1270.1