Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6112219 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6112219, End: 6113838, Length: 1620

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:484899:4890644890644907461683Photorhabdus asymbiotica, complete genomehypothetical protein1e-172606
NC_018000:1877183:1878889187888918804841596Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein5e-136484
NC_011886:177039:1995171995172012051689Arthrobacter chlorophenolicus A6, complete genomeurea amidolyase related protein6e-113408
NC_012590:637651:6394756394756410221548Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein1e-81304
NC_013947:6678000:669712066971206697983864Stackebrandtia nassauensis DSM 44728 chromosome, complete genome1e-50201
NC_013947:6678000:669798066979806698594615Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeAllophanate hydrolase subunit 11e-43178
NC_014378:525717:5344745344745356611188Acetohalobium arabaticum DSM 5501 chromosome, complete genomeurea amidolyase related protein4e-36153
CP002185:794732:814905814905815837933Escherichia coli W, complete genomepredicted enzyme subunit6e-36152
NC_012967:707083:725028725028725960933Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-34148
NC_012947:3077922:307864630786463079578933Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeurea amidolyase1e-34148
NC_010468:3209326:321005032100503210982933Escherichia coli ATCC 8739, complete genomeurea amidolyase related protein1e-34148
NC_014011:527681:5284335284335295121080Aminobacterium colombiense DSM 12261 chromosome, complete genomeurea amidolyase related protein1e-33144
NC_009617:3184924:3206962320696232079631002Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeurea amidolyase-like protein1e-32141
NC_015224:1514747:153622515362251537190966Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-32140
NC_010506:2146444:216056721605672161487921Shewanella woodyi ATCC 51908, complete genomeurea amidolyase related protein7e-32139
NC_015259:734795:764293764293765264972Polymorphum gilvum SL003B-26A1 chromosome, complete genomeAllophanate hydrolase subunit 29e-32138
NC_002163:1471517:147473114747311475696966Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein8e-31135
NC_009617:3184924:320796332079633208679717Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeallophanate hydrolase subunit 13e-30133
NC_014632:1248611:1250156125015612511751020Ilyobacter polytropus DSM 2926 chromosome, complete genomeurea amidolyase-like protein3e-30133
NC_016832:2201860:222193022219302222862933Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-30133
NC_003198:751779:754998754998755930933Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-30133
NC_004631:2205821:222516522251652226097933Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-30133
NC_010102:2322866:234364423436442344576933Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-30132
NC_006677:215466:228649228649229620972Gluconobacter oxydans 621H, complete genomePutative carboxylase6e-30132
NC_018644:516157:537135537135538001867Alpha proteobacterium HIMB59 chromosome, complete genomeAllophanate hydrolase subunit 21e-29131
NC_011080:780850:784069784069785001933Salmonella enterica subsp. enterica serovar Newport str. SL254,allophanate hydrolase, subunit 21e-29131
NC_011083:824659:827878827878828810933Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,allophanate hydrolase, subunit 21e-29131
NC_011094:842038:845257845257846189933Salmonella enterica subsp. enterica serovar Schwarzengrund strallophanate hydrolase subunit 21e-29131
NC_003197:776238:779457779457780389933Salmonella typhimurium LT2, complete genomeputative carboxylase1e-29131
NC_016810:775649:778868778868779800933Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-29131
NC_016856:776735:779954779954780886933Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative carboxylase1e-29131
NC_016857:775649:778868778868779800933Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative carboxylase1e-29131
NC_016860:816000:817510817510818442933Salmonella enterica subsp. enterica serovar Typhimurium strputative carboxylase1e-29131
NC_016863:776734:779953779953780885933Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative carboxylase1e-29131
NC_017046:775636:778855778855779787933Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-29131
NC_014323:4665610:471451847145184715495978Herbaspirillum seropedicae SmR1 chromosome, complete genomeallophanate hydrolase subunit 22e-29130
NC_012660:2143376:216983921698392170813975Pseudomonas fluorescens SBW25 chromosome, complete genomeputative hydrolase4e-29130
NC_006511:2090058:211015421101542111086933Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein8e-29129
NC_011147:2085241:210533721053372106269933Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein8e-29129
NC_013522:736339:742230742230742970741Thermanaerovibrio acidaminovorans DSM 6589, complete genomeAllophanate hydrolase subunit 14e-29129
NC_000961:888000:899468899468900463996Pyrococcus horikoshii OT3, complete genomehypothetical protein1e-28128
NC_016825:158626:1684231684231720373615Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12allophanate hydrolase subunit 22e-28127
NC_012721:1686450:168645016864501687445996Burkholderia glumae BGR1 chromosome 2, complete genomeUrea amidolyase related protein2e-28127
NC_014011:527681:527681527681528436756Aminobacterium colombiense DSM 12261 chromosome, complete genomeAllophanate hydrolase subunit 15e-28126
NC_013209:2248119:2247121224712122481221002Acetobacter pasteurianus IFO 3283-01, complete genomeallophanate hydrolase subunit 24e-28126
NC_017111:2248096:2247098224709822480991002Acetobacter pasteurianus IFO 3283-32, complete genomeallophanate hydrolase subunit 24e-28126
NC_013926:1205443:121905112190511220040990Aciduliprofundum boonei T469 chromosome, complete genomeurea amidolyase related protein3e-27123
NC_012880:2778795:279563527956352796612978Dickeya dadantii Ech703, complete genomeurea amidolyase related protein4e-27123
NC_002516:2306776:232113023211302322071942Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-26121
NC_006511:2090058:211108021110802111736657Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-26119
NC_011080:780850:783419783419784075657Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein6e-26119
NC_011083:824659:827228827228827884657Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein6e-26119
NC_010102:2322866:234457023445702345226657Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-26119
NC_014910:1050706:106561310656131066590978Alicycliphilus denitrificans BC chromosome, complete genomeurea amidolyase related protein6e-26119
NC_014632:1248611:124940412494041250159756Ilyobacter polytropus DSM 2926 chromosome, complete genomeallophanate hydrolase subunit 17e-26119
NC_011094:842038:844607844607845263657Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein8e-26119
NC_011147:2085241:210626321062632106919657Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-26119
NC_004631:2205821:222609122260912226747657Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-26119
NC_003197:776238:778807778807779463657Salmonella typhimurium LT2, complete genomeputative carboxylase5e-26119
NC_017046:775636:778205778205778861657Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-26119
NC_016863:776734:779303779303779959657Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative carboxylase5e-26119
NC_016860:816000:816860816860817516657Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-26119
NC_016857:775649:778218778218778874657Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative carboxylase5e-26119
NC_016856:776735:779304779304779960657Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative carboxylase5e-26119
NC_016832:2201860:222285622228562223512657Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-26119
NC_016810:775649:778218778218778874657Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-26119
NC_015061:2927707:2948013294801329490141002Rahnella sp. Y9602 chromosome, complete genomeurea amidolyase1e-25118
NC_018691:761560:7788897788897825453657Alcanivorax dieselolei B5 chromosome, complete genomeUrea amidolyase1e-25118
NC_013522:736339:7411727411727422331062Thermanaerovibrio acidaminovorans DSM 6589, complete genomeurea amidolyase related protein1e-25118
NC_011894:957897:978241978241979230990Methylobacterium nodulans ORS 2060, complete genomeurea amidolyase related protein1e-25118
NC_003198:751779:754348754348755004657Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-25118
NC_014378:525717:533770533770534486717Acetohalobium arabaticum DSM 5501 chromosome, complete genomeAllophanate hydrolase subunit 13e-25117
NC_011725:2949519:295971629597162960705990Bacillus cereus B4264 chromosome, complete genomeurea amidolyase3e-25117
CP002185:794732:814255814255814911657Escherichia coli W, complete genomepredicted enzyme subunit5e-25116
NC_012947:3077922:307957230795723080228657Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeallophanate hydrolase subunit 15e-25116
NC_012967:707083:724378724378725034657Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein5e-25116
NC_009092:4585784:872287229408687Shewanella loihica PV-4, complete genomeAllophanate hydrolase subunit 14e-25116
NC_010468:3209326:321097632109763211632657Escherichia coli ATCC 8739, complete genomeAllophanate hydrolase subunit 18e-25115
NC_013926:1205443:121838912183891219054666Aciduliprofundum boonei T469 chromosome, complete genomeAllophanate hydrolase subunit 11e-24115
NC_014910:1050706:106493310649331065616684Alicycliphilus denitrificans BC chromosome, complete genomeallophanate hydrolase subunit 11e-24115
NC_017047:2957957:2978263297826329792641002Rahnella aquatilis HX2 chromosome, complete genomeurea amidolyase2e-24114
NC_015379:1600715:1619958161995816235873630Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Urea carboxylase (Allophanate hydrolase subunit 2)3e-24113
NC_002163:1471517:147401014740101474750741Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein7e-24112
NC_014934:4164603:418451441845144185251738Cellulophaga algicola DSM 14237 chromosome, complete genomehypothetical protein2e-23111
NC_000961:888000:898800898800899477678Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-23111
NC_016582:93754:9275392753937571005Streptomyces bingchenggensis BCW-1 chromosome, complete genomeallophanate hydrolase subunit 21e-23111
NC_009092:4585784:779377938725933Shewanella loihica PV-4, complete genomeurea amidolyase related protein3e-23110
NC_015559:3645181:3654751365475136583773627Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeurea carboxylase7e-23109
NC_014310:785220:788763788763789755993Ralstonia solanacearum PSI07 megaplasmid, complete sequenceallophanate hydrolase subunit 2 domain7e-23108
NC_014008:1552679:156409015640901564956867Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeAllophanate hydrolase subunit 21e-22108
NC_011725:2949519:296069629606962961409714Bacillus cereus B4264 chromosome, complete genomehypothetical protein1e-22108
NC_014158:1651326:1666822166682216688131992Tsukamurella paurometabola DSM 20162 chromosome, complete genomeurea amidolyase related protein2e-22107
NC_015224:1514747:153557515355751536231657Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein3e-22107
NC_014394:808734:8268268268268304523627Gallionella capsiferriformans ES-2 chromosome, complete genomeurea carboxylase5e-22106
NC_006677:215466:228011228011228652642Gluconobacter oxydans 621H, complete genomehypothetical protein9e-22105
NC_008260:2142311:2165432216543221690193588Alcanivorax borkumensis SK2, complete genomeurea carboxylase/allophanate hydrolase2e-21104
NC_010506:2146444:215989021598902160570681Shewanella woodyi ATCC 51908, complete genomeAllophanate hydrolase subunit 12e-21104
NC_011894:957897:977579977579978244666Methylobacterium nodulans ORS 2060, complete genomeAllophanate hydrolase subunit 16e-21102
NC_015172:775128:7751287751287787723645Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeurea carboxylase7e-21102
NC_008571:2229369:225049522504952251226732Gramella forsetii KT0803, complete genomeallophanate hydrolase subunit 17e-21102
NC_013959:83992:8399283992876153624Sideroxydans lithotrophicus ES-1 chromosome, complete genomeurea carboxylase9e-21102
NC_008571:2229369:224962722496272250505879Gramella forsetii KT0803, complete genomeallophanate hydrolase subunit 23e-20100
NC_014934:4164603:418524441852444186083840Cellulophaga algicola DSM 14237 chromosome, complete genomeallophanate hydrolase subunit 26e-2099.4
NC_010995:3197686:3197686319768632013033618Cellvibrio japonicus Ueda107, complete genomeurea amidolyase homolog2e-1997.4
NC_017192:1841987:1863541186354118671373597Arcobacter sp. L, complete genomeurea carboxylase4e-1996.7
NC_011757:4205794:4224935422493542284653531Methylobacterium chloromethanicum CM4, complete genomeurea carboxylase6e-1996.3
NC_007958:2423335:2442099244209924456503552Rhodopseudomonas palustris BisB5, complete genomeAllophanate hydrolase subunit 27e-1995.9
NC_014310:785220:788098788098788766669Ralstonia solanacearum PSI07 megaplasmid, complete sequenceallophanate hydrolase subunit 18e-1995.5
NC_002516:2306776:232206823220682322781714Pseudomonas aeruginosa PAO1, complete genomehypothetical protein8e-1995.5
NC_017047:2957957:297755629775562978266711Rahnella aquatilis HX2 chromosome, complete genomeallophanate hydrolase subunit 11e-1895.1
NC_015061:2927707:294730629473062948016711Rahnella sp. Y9602 chromosome, complete genomeAllophanate hydrolase subunit 11e-1895.1
NC_013956:4490000:4505944450594445095493606Pantoea ananatis LMG 20103 chromosome, complete genomeDUR1,22e-1894.4
NC_012792:1091669:1114074111407411150781005Variovorax paradoxus S110 chromosome 2, complete genomeurea amidolyase related protein3e-1894
NC_016817:185000:2064042064042100093606Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceurea carboxylase3e-1894
NC_018644:516157:537998537998538717720Alpha proteobacterium HIMB59 chromosome, complete genomeAllophanate hydrolase subunit 15e-1892.8
NC_016023:915178:9289319289319325333603Bacillus coagulans 36D1 chromosome, complete genomeurea carboxylase1e-1792
NC_011283:2684046:2684046268404626876513606Klebsiella pneumoniae 342 chromosome, complete genomeurea carboxylase4e-1790.1
NC_013850:2685835:2682233268223326858383606Klebsiella variicola At-22 chromosome, complete genomeurea carboxylase7e-1789.4
NC_012522:3038890:305494530549453055658714Rhodococcus opacus B4, complete genomehypothetical protein7e-1789
NC_014008:1552679:156495315649531565594642Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeAllophanate hydrolase subunit 12e-1687.8
NC_008544:55451:5545155451590683618Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceBiotin carboxylation region8e-1685.9
NC_015275:521436:5261765261765297693594Clostridium lentocellum DSM 5427 chromosome, complete genomeurea carboxylase8e-1685.5
NC_012522:3038890:3053909305390930549521044Rhodococcus opacus B4, complete genomehypothetical protein1e-1585.1
NC_017111:2248096:224809622480962248797702Acetobacter pasteurianus IFO 3283-32, complete genomeallophanate hydrolase subunit 12e-1584.7
NC_013209:2248119:224811922481192248820702Acetobacter pasteurianus IFO 3283-01, complete genomeallophanate hydrolase subunit 12e-1584.7
NC_012792:1091669:111340911134091114077669Variovorax paradoxus S110 chromosome 2, complete genomeAllophanate hydrolase subunit 16e-1479.7
NC_015259:734795:763428763428764303876Polymorphum gilvum SL003B-26A1 chromosome, complete genomeAllophanate hydrolase, subunit 16e-1169.3
NC_016582:93754:937549375494491738Streptomyces bingchenggensis BCW-1 chromosome, complete genomeallophanate hydrolase subunit 12e-1067.8
NC_012880:2778795:279660227966022797483882Dickeya dadantii Ech703, complete genomeAllophanate hydrolase subunit 18e-0962.4
NC_012721:1686450:168558516855851686460876Burkholderia glumae BGR1 chromosome 2, complete genomeAllophanate hydrolase subunit 11e-0758.9
NC_012660:2143376:216897021689702169842873Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein2e-0654.3