Pre_GI: BLASTP Hits

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Query: NC_004578:212468:222528 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 222528, End: 223745, Length: 1218

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012846:1741000:1741948174194817431061159Bartonella grahamii as4aup, complete genome8e-28125
NC_015957:5136500:5147067514706751483591293Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp7e-22105
NC_015381:1318818:1341068134106813423061239Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-21104
NC_013722:2919560:2934132293413229354031272Xanthomonas albilineans, complete genomeputative carbamoyl-phosphate synthase, cpsase protein1e-21104
NC_016633:1798758:1810586181058618117821197Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase7e-2098.6
NC_010516:2877407:2885755288575528869001146Clostridium botulinum B1 str. Okra, complete genomeputative carbamoyl-phosphate synthase large chain2e-1893.6
NC_012522:4692260:4694641469464146958341194Rhodococcus opacus B4, complete genomehypothetical protein7e-1788.6
NC_009832:4482500:4508690450869045099311242Serratia proteamaculans 568, complete genomeprotein of unknown function DUF2018e-1788.6
NC_014206:1202907:1211656121165612128791224Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein3e-1686.3
NC_020304:2677372:2698138269813826992921155Desulfocapsa sulfexigens DSM 10523, complete genomebiotin carboxylase7e-1685.1
NC_014976:759129:7710707710707723111242Bacillus subtilis BSn5 chromosome, complete genomephosphoribosylglycinamide synthetase2e-1584
NC_015738:978794:9901309901309913351206Eggerthella sp. YY7918, complete genomebiotin carboxylase2e-1584
NC_015732:982774:9915969915969928521257Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein2e-1584
NC_013204:2826500:2847006284700628482141209Eggerthella lenta DSM 2243, complete genomeprotein of unknown function DUF2011e-1481.3
NC_003888:7659639:7662638766263876638551218Streptomyces coelicolor A3(2), complete genomecarboxylase1e-1481.3
NC_002678:4885790:4900276490027649015051230Mesorhizobium loti MAFF303099, complete genomehypothetical protein3e-1480.1
NC_016633:1798758:1812218181221818133481131Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase7e-1478.6
NC_008268:4669530:4674995467499546762211227Rhodococcus sp. RHA1, complete genomehypothetical protein1e-1377.8
NC_009707:1338742:1339815133981513410531239Campylobacter jejuni subsp. doylei 269.97 chromosome, completehypothetical protein3e-1376.6
NC_006510:2778777:2786295278629527875211227Geobacillus kaustophilus HTA426, complete genomehypothetical protein4e-1376.3
NC_016593:2851243:2858761285876128599901230Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein4e-1376.3
NC_011663:1627220:1644567164456716457961230Shewanella baltica OS223 chromosome, complete genomehypothetical protein6e-1375.5
NC_014206:771765:7813537813537825821230Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein6e-1375.5
NC_013525:1221604:1263705126370512650181314Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeprotein of unknown function DUF2019e-1375.1
NC_014915:2847680:2855725285572528569541230Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF2012e-1273.9
NC_013411:735838:7456037456037468321230Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF2012e-1273.9
NC_014500:4049384:4060026406002640612251200Dickeya dadantii 3937 chromosome, complete genomeargininosuccinate lyase2e-1273.9
NC_013595:4031947:4057207405720740584421236Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-1272.4
NC_011831:2728932:2747266274726627485221257Chloroflexus aggregans DSM 9485, complete genomephosphoribosylglycinamide synthetase1e-1171.2
NC_014166:2959688:2970841297084129719501110Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein2e-1170.9
NC_015675:6493444:6511800651180065130201221Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp2e-1170.5
NC_019973:5869500:5886089588608958873091221Mesorhizobium australicum WSM2073, complete genomebiotin carboxylase2e-1170.5
NC_014923:5940500:5957129595712959583491221Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP-dependent carboxylate-amine ligase domain protein ATP-grasp2e-1170.5
NC_013093:2230171:2245939224593922472101272Actinosynnema mirum DSM 43827, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp5e-1169.3
NC_016112:3103716:3135584313558431367771194Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein7e-1168.9
NC_005773:4899252:4913517491351749147821266Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-1067.4
NC_013411:735838:7468257468257480211197Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF2013e-1066.6
NC_014915:2847680:2854536285453628557321197Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF2013e-1066.6
NC_015381:1318818:1342320134232013436371318Burkholderia gladioli BSR3 chromosome 1, complete sequence6e-1065.9
NC_016582:7737930:7761321776132177625861266Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein6e-1065.9
NC_014150:3085013:3107308310730831094792172Brachyspira murdochii DSM 12563 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp6e-1065.9
NC_005773:5149768:5194532519453251958991368Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein5e-1065.9
NC_014500:4883794:490090549009054901627723Dickeya dadantii 3937 chromosome, complete genomephosphoribosylglycinamide synthetase ATP-grasp (A) domain-containing protein1e-0964.7
NC_007645:3581114:3583320358332035845581239Hahella chejuensis KCTC 2396, complete genomeprobable carbamoylphosphate synthase2e-0964.3
NC_014206:771765:7825757825757837711197Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein1e-0964.3
NC_007517:480303:4953134953134965271215Geobacter metallireducens GS-15, complete genomeputative glycolate oxidase1e-0964.3
NC_006510:2778777:2785106278510627863021197Geobacillus kaustophilus HTA426, complete genomehypothetical protein1e-0964.3
NC_016593:2851243:2857572285757228587681197Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completecarboxylase1e-0964.3
NC_009052:3467000:3471137347113734723541218Shewanella baltica OS155, complete genomephosphoribosylglycinamide synthetase2e-0963.5
NC_014391:1910273:1927787192778719290371251Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein3e-0963.5
NC_003901:815389:8298108298108310091200Methanosarcina mazei Go1, complete genomehypothetical protein4e-0963.2
NC_013223:724394:7430347430347442661233Desulfohalobium retbaense DSM 5692, complete genomephosphoribosylglycinamide synthetase4e-0963.2
NC_013440:8405719:8423293842329384244861194Haliangium ochraceum DSM 14365, complete genomeprotein of unknown function DUF2013e-0963.2
NC_014206:2516000:2542163254216325433981236Geobacillus sp. C56-T3 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp5e-0962.4
NC_014915:1080793:1088971108897110902061236Geobacillus sp. Y412MC52 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp5e-0962.4
NC_013411:1941762:1949027194902719502621236Geobacillus sp. Y412MC61, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp5e-0962.4
NC_009512:1025365:1035982103598210372141233Pseudomonas putida F1, complete genomeBiotin carboxylase-like protein7e-0962
NC_014228:3353896:3373452337345233747171266Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein7e-0962
NC_013206:21288:2917129171304031233Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446phosphoribosylglycinamide synthetase1e-0861.2
NC_010995:4525119:4535045453504545363011257Cellvibrio japonicus Ueda107, complete genomeputative phosphoribosylglycinamide synthetase1e-0861.2
NC_015733:864959:8871728871728884821311Pseudomonas putida S16 chromosome, complete genomehypothetical protein1e-0861.2
NC_013592:2059138:2073970207397020752681299Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF2013e-0859.7
NC_016842:748419:7640437640437658361794Treponema pallidum subsp. pertenue str. SamoaD chromosome, completebiotin carboxylase1e-0758.2
NC_016843:747950:7642307642307660231794Treponema pallidum subsp. pertenue str. Gauthier chromosome,biotin carboxylase1e-0758.2
NC_016848:748873:7644977644977662901794Treponema pallidum subsp. pertenue str. CDC2 chromosome, completebiotin carboxylase1e-0758.2
NC_010465:62348:8103381033822771245Yersinia pseudotuberculosis YPIII, complete genomephosphoribosylglycinamide synthetase2e-0757.8
NC_015160:3556114:3562846356284635640511206Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative carbamoyl-phosphate-synthetase2e-0757.8
NC_008322:1595500:1606266160626616074531188Shewanella sp. MR-7, complete genomeprotein of unknown function DUF2011e-0757.8
NC_017160:4508000:4508987450898745102311245Yersinia pestis D182038 chromosome, complete genomeacetyl-CoA carboxylase1e-0757.8
NC_019973:5899142:5899142589914259004281287Mesorhizobium australicum WSM2073, complete genomebiotin carboxylase1e-0757.8
NC_014923:5970182:5970182597018259714681287Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeCarbamoyl-phosphate synthase L chain ATP-binding protein1e-0757.8
NC_015675:6493444:6524853652485365261391287Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp1e-0757.8
NC_008278:5012000:5046368504636850475911224Frankia alni ACN14a, complete genomehypothetical protein; putative Glutathione synthetase ATP-binding domain2e-0757.4
NC_011567:238249:2382492382492394871239Anoxybacillus flavithermus WK1, complete genomeAlanine-anticapsin ligase bacD related protein3e-0756.6
NC_014479:188009:2038432038432050691227Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative amino acid ligase of ATP-grasp superfamily5e-0756.2
NC_010741:745357:7639087639087657011794Treponema pallidum subsp. pallidum SS14, complete genomepossible phosphoribosylglycinamide formyltransferase6e-0755.8
NC_000919:746875:7624607624607642531794Treponema pallidum subsp. pallidum str. Nichols, complete genomephosphoribosylglycinamide formyltransferase, putative6e-0755.8
NC_016844:748117:7643977643977661901794Treponema pallidum subsp. pallidum DAL-1 chromosome, completebiotin carboxylase6e-0755.8
NC_017268:747429:7637097637097655021794Treponema pallidum subsp. pallidum str. Chicago chromosome,CarB family protein6e-0755.8
NC_021508:745388:7639397639397657321794Treponema pallidum subsp. pallidum SS14, complete genomebiotin carboxylase6e-0755.8
NC_008525:270310:2910552910552944803426Pediococcus pentosaceus ATCC 25745, complete genomePyruvate carboxylase6e-0755.8
NC_015714:741044:7573247573247591171794Treponema paraluiscuniculi Cuniculi A chromosome, complete genomebiotin carboxylase5e-0755.8
NC_008061:2368517:2375417237541723767781362Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceprotein of unknown function DUF2011e-0654.7
NC_008543:2871747:2890204289020428915651362Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceprotein of unknown function DUF2011e-0654.7
NC_020209:397376:4143374143374156291293Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-0653.9
NC_014841:131308:1390631390631403101248Pantoea sp. At-9b plasmid pPAT9B04, complete sequencehypothetical protein3e-0653.5
NC_003552:4714457:4754776475477647560351260Methanosarcina acetivorans C2A, complete genomehypothetical protein3e-0653.1
NC_013592:1730505:1743627174362717448081182Dickeya dadantii Ech586, complete genomeputative carbamoyl-phosphate-synthetase protein4e-0652.8
NC_011992:1505106:1525332152533215285833252Acidovorax ebreus TPSY, complete genomecarbamoyl-phosphate synthase, large subunit5e-0652.8
NC_015422:2806832:2808589280858928118403252Alicycliphilus denitrificans K601 chromosome, complete genomecarbamoyl-phosphate synthase, large subunit7e-0652
NC_015566:3417951:3435925343592534371451221Serratia sp. AS12 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp7e-0652
NC_019814:320260:3288803288803321193240Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonascarbamoyl-phosphate synthase large chain8e-0652