Pre_GI: BLASTP Hits

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Query: NC_004547:1174650:1208167 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1208167, End: 1209129, Length: 963

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:4591295:459839645983964599361966Photorhabdus asymbiotica, complete genomeprotein fecr1e-122439
NC_005126:5188976:519356151935615194526966Photorhabdus luminescens subsp. laumondii TTO1, complete genomeProtein fecR1e-119429
NC_014228:3591758:3599750359975036007931044Xenorhabdus nematophila ATCC 19061, complete genomeProtein fecR3e-118425
NC_012759:4433500:445352244535224454475954Escherichia coli BW2952 chromosome, complete genomefec operon regulator FecR5e-118424
AC_000091:4501430:452144445214444522397954Escherichia coli W3110 DNA, complete genometransmembrane signal transducer for ferric citrate transport5e-118424
NC_010473:4596500:461659546165954617548954Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport5e-118424
NC_016822:4889656:489301448930144893967954Shigella sonnei 53G, complete genomefec operon regulator FecR1e-117423
NC_016612:3843358:387155938715593872506948Klebsiella oxytoca KCTC 1686 chromosome, complete genomefec operon regulator FecR2e-97355
NC_018691:1293449:131480613148061315771966Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor FecR4e-50198
NC_015556:2265940:230352123035212304444924Pseudomonas fulva 12-X chromosome, complete genomeanti-FecI sigma factor, FecR1e-49196
NC_015572:427732:455162455162456127966Methylomonas methanica MC09 chromosome, complete genomeanti-FecI sigma factor FecR1e-46186
NC_018691:318662:318662318662319606945Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor, FecR1e-45183
NC_008027:2648560:265110926511092652029921Pseudomonas entomophila L48, complete genomeFecR-like transmembrane sensor3e-44179
NC_007974:934000:952517952517953503987Ralstonia metallidurans CH34 chromosome 2, complete sequenceputative FecR4e-42171
NC_010322:768849:791778791778792734957Pseudomonas putida GB-1 chromosome, complete genomeanti-FecI sigma factor FecR1e-39163
NC_014640:2693060:269635326963532697321969Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein2e-39163
NC_016830:3697173:371480137148013715781981Pseudomonas fluorescens F113 chromosome, complete genomeFe2+-dicitrate sensor membrane protein8e-39160
NC_008027:4889662:489228348922834893212930Pseudomonas entomophila L48, complete genomeFecR-like transmembrane sensor8e-36150
NC_007953:1088933:108798010879801088936957Burkholderia xenovorans LB400 chromosome 3, complete sequencePutative FecR2e-33143
NC_012560:201237:216665216665217627963Azotobacter vinelandii DJ, complete genomeanti-sigma factor, FecR family7e-32138
NC_021150:201237:216665216665217627963Azotobacter vinelandii CA6, complete genomeanti-sigma factor, FecR family7e-32138
NC_005966:1780468:178461817846181785559942Acinetobacter sp. ADP1, complete genomemembrane bound regulator in multi-component regulatory system with cytoplasmic FecI (sigma factor) and FecA (outer membrane receptor)7e-29128
NC_014640:5047201:5066881506688150678941014Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein3e-28125
NC_014640:5047201:506272550627255063720996Achromobacter xylosoxidans A8 chromosome, complete genomeFecR family protein7e-28124
NC_015563:4093650:4097302409730240983301029Delftia sp. Cs1-4 chromosome, complete genomeanti-FecI sigma factor FecR1e-25117
NC_010322:768849:785508785508786506999Pseudomonas putida GB-1 chromosome, complete genomeanti-FecI sigma factor FecR6e-25115
NC_015410:1324313:132982813298281330793966Pseudomonas mendocina NK-01 chromosome, complete genomeputative transmembrane sensor3e-23109
NC_016112:1735044:175536217553621756315954Methylomicrobium alcaliphilum chromosome, complete genomeAnti-FecI sigma factor, FecR1e-21104
NC_009937:5033152:503543550354355036382948Azorhizobium caulinodans ORS 571, complete genomeputative iron siderophore sensor protein4e-2099
NC_018691:359695:359695359695360609915Alcanivorax dieselolei B5 chromosome, complete genomeAnti-FecI sigma factor, FecR2e-1893.6
NC_014664:1360524:137378513737851374765981Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeanti-FecI sigma factor, FecR1e-1790.5
NC_014100:2782000:280326228032622804257996Caulobacter segnis ATCC 21756 chromosome, complete genomeanti-FecI sigma factor FecR3e-1789.4
NC_013421:1954915:197058119705811971534954Pectobacterium wasabiae WPP163, complete genomeanti-FecI sigma factor, FecR6e-1788.6
NC_015594:1210736:121465212146521215626975Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeanti-FecI sigma factor FecR8e-1788.2
NC_015593:2841856:288455028845502885536987Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeanti-FecI sigma factor FecR3e-1685.9
NC_011958:1121387:114404611440461145020975Rhodobacter sphaeroides KD131 chromosome 2, complete genomeFecR protein3e-1479.3
NC_009040:43791:623866238663360975Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeputative FecR6e-1478.6
NC_015976:2150676:2158706215870621597341029Sphingobium sp. SYK-6, complete genomeputative anti-sigma factor1e-1377.4
NC_014375:1146328:117307511730751174031957Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeanti-FecI sigma factor, FecR2e-1377
NC_002516:1474000:147546414754641476306843Pseudomonas aeruginosa PAO1, complete genomeprobable transmembrane sensor1e-1274.3
NC_007947:1429165:1440674144067414417201047Methylobacillus flagellatus KT, complete genomeputative FecR4e-1272.4
NC_014540:2908912:291099429109942911962969Burkholderia sp. CCGE1003 chromosome 2, complete sequenceanti-FecI sigma factor, FecR6e-1271.6
NC_011144:2710876:272531427253142726300987Phenylobacterium zucineum HLK1, complete genometranscriptional regulator6e-1271.6
NC_017192:1933106:193807519380751939040966Arcobacter sp. L, complete genomesigma factor regulator3e-1169.7
NC_015160:2239933:2256633225663322578081176Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR4e-1168.9
NC_020409:584000:5932265932265942901065Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Anti-FecI sigma factor, FecR1e-1067.4
NC_010338:2136193:2139478213947821405121035Caulobacter sp. K31, complete genomeanti-FecI sigma factor, FecR5e-1065.5
NC_015497:4683741:470812247081224709078957Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeanti-FecI sigma factor, FecR1e-0964.3
NC_017187:937649:950809950809951777969Arcobacter butzleri ED-1, complete genomesigma factor regulator2e-0963.5
NC_009850:972692:985853985853986821969Arcobacter butzleri RM4018, complete genomesigma factor regulatory protein, FecR/PupR family2e-0963.5
NC_012560:2546000:254697025469702547803834Azotobacter vinelandii DJ, complete genomeAnti-sigma factor, FecR family1e-0860.8
NC_021150:2546000:254698225469822547815834Azotobacter vinelandii CA6, complete genomeAnti-sigma factor, FecR family1e-0860.8
NC_015976:3118804:311880431188043119787984Sphingobium sp. SYK-6, complete genomeputative anti-sigma factor2e-0860.1
NC_009615:1469642:151552015155201516371852Parabacteroides distasonis ATCC 8503 chromosome, complete genomeanti-sigma factor4e-0859.3
NC_013061:1052957:1058539105853910597021164Pedobacter heparinus DSM 2366, complete genomeFecR protein6e-0858.5
NC_015164:1812439:182494818249481825859912Bacteroides salanitronis DSM 18170 chromosome, complete genomeanti-FecI sigma factor, FecR7e-0858.2
NC_008686:1592073:161110316111031612077975Paracoccus denitrificans PD1222 chromosome 1, complete sequenceputative FecR2e-0757
NC_013132:1165218:1166951116695111680991149Chitinophaga pinensis DSM 2588, complete genomeanti-FecI sigma factor, FecR2e-0757
NC_010995:2123909:2130175213017521311971023Cellvibrio japonicus Ueda107, complete genomeprobable transmembrane sensor2e-0756.6
NC_015160:3180193:3195787319578731969471161Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR3e-0756.2
NC_006347:625328:637012637012637941930Bacteroides fragilis YCH46, complete genomeputative anti-sigma factor5e-0755.5
NC_013061:2077603:2092795209279520939521158Pedobacter heparinus DSM 2366, complete genomeFecR protein5e-0755.5
NC_016776:625628:640475640475641404930Bacteroides fragilis 638R, complete genomeputative anti-sigma factor8e-0754.7
NC_013132:153163:1710611710611722061146Chitinophaga pinensis DSM 2588, complete genomeanti-FecI sigma factor, FecR2e-0653.5
NC_014934:869715:8749888749888761511164Cellulophaga algicola DSM 14237 chromosome, complete genomeanti-feci sigma factor, fecr2e-0653.1
NC_015160:1734454:1749552174955217507301179Odoribacter splanchnicus DSM 20712 chromosome, complete genomeanti-FecI sigma factor, FecR3e-0652.8
NC_007492:3655545:367411036741103675048939Pseudomonas fluorescens PfO-1, complete genomePutative FecR3e-0652.8
NC_013061:1236235:1260605126060512617591155Pedobacter heparinus DSM 2366, complete genomeFecR protein4e-0652.8
NC_016609:2951301:2974250297425029754611212Niastella koreensis GR20-10 chromosome, complete genomeanti-FecI sigma factor FecR6e-0652
NC_010943:1379707:138250813825081383476969Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane protein7e-0651.6