Pre_GI: BLASTP Hits

Some Help

Query: NC_004547:1174650:1180862 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1180862, End: 1182331, Length: 1470

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:3421500:3444978344497834464411464Dickeya dadantii Ech703, complete genomeintegrase family protein0804
NC_009801:3013838:3031348303134830328081461Escherichia coli E24377A, complete genomeputative phage integrase family protein0773
NC_014562:2563466:2598166259816625996351470Pantoea vagans C9-1 chromosome, complete genomePutative integrase/recombinase0734
NC_013961:851044:856197856197857129933Erwinia amylovora, complete genomehypothetical protein5e-130464
NC_006905:2987863:300333730033373003747411Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-36153
NC_010102:2967464:301442930144293014839411Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-36153
NC_012125:2938519:298371929837192984129411Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein4e-36153
NC_016863:2974333:301808930180893018610522Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein5e-36152
NC_016857:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein5e-36152
NC_016856:3026426:306983630698363070357522Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein5e-36152
NC_016810:3028421:307217530721753072696522Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-36152
NC_003197:3005842:304959930495993050120522Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein5e-36152
NC_011094:2913500:295493629549362955457522Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-35150
NC_011294:2919906:293446929344692934879411Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-35149
NC_011274:2909799:292527329252732925683411Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-35149
NC_011147:2814664:285833828583382858664327Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-26119
NC_006511:2819128:286280228628022863128327Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-26119
NC_003198:2856596:290026029002602900586327Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-24115
NC_004631:2872192:288611728861172886443327Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-24115
NC_015726:2817352:2824216282421628254301215Cupriavidus necator N-1 chromosome 1, complete sequencephage-like integrase3e-20100
NC_015731:2460248:2474490247449024757611272Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein4e-1996.7
NC_010694:2492378:250434125043412504604264Erwinia tasmaniensis, complete genomePutative integrase, fragment4e-1892.8
NC_011146:3991683:4006564400656440080241461Geobacter bemidjiensis Bem, complete genomeintegrase family protein7e-1789
NC_014972:480355:4934964934964946591164Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein9e-1582
NC_002927:4392768:4402025440202544032991275Bordetella bronchiseptica RB50, complete genomephage-related integrase9e-1582
NC_016026:296951:3102273102273113781152Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage integrase family protein2e-1273.9
NC_009488:1126000:112868711286871129430744Orientia tsutsugamushi str. Boryong, complete genome6e-1169.3
NC_009488:57889:608196081961682864Orientia tsutsugamushi str. Boryong, complete genome7e-1169.3
NC_009488:1249492:126651512665151267378864Orientia tsutsugamushi str. Boryong, complete genome7e-1169.3
NC_009488:1673756:1676815167681516780591245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase9e-1168.9
NC_009488:1917000:1918697191869719199411245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase9e-1168.9
NC_009488:1165927:1178998117899811802421245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase8e-1168.9
NC_009488:1465781:1470586147058614718301245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase8e-1168.9
NC_009488:1952640:1956004195600419572481245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase8e-1168.9
NC_009488:803873:8177908177908190341245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase8e-1168.9
NC_009488:903000:9140619140619153051245Orientia tsutsugamushi str. Boryong, complete genomephage-related integrase8e-1168.9
NC_010793:1723365:1726048172604817272471200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase2e-1067.8
NC_010793:1628500:1631109163110916323081200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase2e-1067.4
NC_010793:1695716:1709642170964217108411200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase2e-1067.4
NC_010793:1811401:1846220184622018473381119Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase7e-1065.9
AC_000091:273325:2949202949202963201401Escherichia coli W3110 DNA, complete genomepredicted phage integrase2e-0964.3
NC_010473:247429:2704702704702718701401Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted phage integrase2e-0964.3
NC_000913:272071:2949202949202963201401Escherichia coli K12, complete genomeCP4-6 prophage; predicted phage integrase2e-0964.3
NC_008609:3921113:3938275393827539394831209Pelobacter propionicus DSM 2379, complete genomephage integrase family protein2e-0964.3
NC_012912:1053618:1066900106690010682461347Dickeya zeae Ech1591, complete genomeintegrase family protein4e-0963.2
NC_010793:30488:468754687547690816Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase5e-0962.8
NC_010793:1922000:1940379194037919415181140Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase1e-0758.5
NC_010793:1508974:153172715317271532173447Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase1e-0758.2
NC_020911:1859210:1864378186437818654661089Octadecabacter antarcticus 307, complete genomeputative integrase2e-0757.8
NC_020304:752012:7746467746467757581113Desulfocapsa sulfexigens DSM 10523, complete genomesite-specific recombinase XerD2e-0757.4
NC_015580:141379:1621711621711633671197Novosphingobium sp. PP1Y, complete genomephage integrase2e-0654.7