Pre_GI: BLASTP Hits

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Query: NC_004463:18497:41537 Bradyrhizobium japonicum USDA 110, complete genome

Start: 41537, End: 42445, Length: 909

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:18493:415304153042072543Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-91336
NC_007925:3933765:395291039529103953635726Rhodopseudomonas palustris BisB18, complete genomeLytic transglycosylase, catalytic1e-53210
NC_009720:4406991:444047844404784441275798Xanthobacter autotrophicus Py2, complete genomelytic transglycosylase catalytic4e-52204
NC_017249:3119000:312077331207733121489717Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-48191
NC_008686:1472899:147489714748971475661765Paracoccus denitrificans PD1222 chromosome 1, complete sequenceLytic transglycosylase, catalytic3e-47189
NC_011386:3723019:257725773497921Oligotropha carboxidovorans OM5, complete genomelytic transglycosylase, catalytic4e-47188
NC_014834:959986:959986959986960753768Rhodopseudomonas palustris DX-1 chromosome, complete genomelytic transglycosylase2e-42173
NC_011365:1135750:116084511608451161546702Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomelytic transglycosylase1e-40166
NC_016027:2512297:2515110251511025162521143Gluconacetobacter xylinus NBRC 3288, complete genomemurein transglycosylase1e-37157
NC_016027:1647110:1669092166909216702611170Gluconacetobacter xylinus NBRC 3288, complete genomemurein transglycosylase3e-37155
NC_013209:2476039:2490068249006824913991332Acetobacter pasteurianus IFO 3283-01, complete genomemurein transglycosylase1e-36154
NC_017100:2476822:2491275249127524926061332Acetobacter pasteurianus IFO 3283-03, complete genomemurein transglycosylase1e-36154
NC_017108:2474583:2488612248861224899431332Acetobacter pasteurianus IFO 3283-12, complete genomemurein transglycosylase1e-36154
NC_017111:2474601:2488630248863024899611332Acetobacter pasteurianus IFO 3283-32, complete genomemurein transglycosylase1e-36154
NC_017121:2474588:2488617248861724899481332Acetobacter pasteurianus IFO 3283-07, complete genomemurein transglycosylase1e-36154
NC_017125:2476802:2491255249125524925861332Acetobacter pasteurianus IFO 3283-22, complete genomemurein transglycosylase1e-36154
NC_017146:2476844:2491297249129724926281332Acetobacter pasteurianus IFO 3283-26, complete genomemurein transglycosylase1e-36154
NC_017150:2383361:2397814239781423991451332Acetobacter pasteurianus IFO 3283-01-42C, complete genomemurein transglycosylase1e-36154
NC_010125:381711:399853399853400524672Gluconacetobacter diazotrophicus PAl 5, complete genomeputative lytic transglycosylase1e-36154
NC_014100:2782000:279910827991082799737630Caulobacter segnis ATCC 21756 chromosome, complete genomelytic transglycosylase6e-37154
NC_010338:2443765:244503624450362445866831Caulobacter sp. K31, complete genomeLytic transglycosylase catalytic3e-34145
NC_009719:1972545:197254519725451973300756Parvibaculum lavamentivorans DS-1 chromosome, complete genomelytic transglycosylase catalytic subunit2e-33143
NC_015186:2908387:291296029129602913463504Acidiphilium multivorum AIU301, complete genomehypothetical protein9e-25114
NC_007760:4055860:409261540926154093244630Anaeromyxobacter dehalogenans 2CP-C, complete genomeLytic transglycosylase, catalytic5e-1995.1
NC_009675:4281249:429915642991564299785630Anaeromyxobacter sp. Fw109-5 chromosome, complete genomelytic transglycosylase catalytic subunit1e-1894
NC_009483:5113729:512062851206285121383756Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase1e-1790.5
NC_011891:4104000:412519141251914125820630Anaeromyxobacter dehalogenans 2CP-1, complete genomeLytic transglycosylase catalytic2e-1790.1
NC_007644:1638083:164380416438041644424621Moorella thermoacetica ATCC 39073, complete genomeLytic transglycosylase, catalytic1e-1687.8
NC_014150:446359:453240453240453983744Brachyspira murdochii DSM 12563 chromosome, complete genomeLytic transglycosylase catalytic4e-1685.5
NC_014972:137184:158025158025158633609Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic8e-1684.7
NC_014733:1073540:107696010769601077583624Methylovorus sp. MP688 chromosome, complete genomelytic transglycosylase catalytic9e-1684.3
NC_017243:1229597:124215712421571242882726Brachyspira intermedia PWS/A chromosome, complete genomelytic transglycosylase6e-1581.6
NC_012225:787737:794109794109794822714Brachyspira hyodysenteriae WA1, complete genomelytic transglycosylase9e-1580.9
NC_018607:1803500:180877418087741809490717Brachyspira pilosicoli B2904 chromosome, complete genomelytic transglycosylase2e-1480.1
NC_014972:544146:547516547516548247732Desulfobulbus propionicus DSM 2032 chromosome, complete genomelytic transglycosylase catalytic2e-1479.7
NC_018604:1045774:105879510587951059511717Brachyspira pilosicoli WesB complete genomelytic transglycosylase3e-1479.3
NC_007517:2165657:217968121796812180292612Geobacter metallireducens GS-15, complete genomeLytic transglycosylase, catalytic7e-1478.2
NC_013792:109203:1174391174391196102172Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequenceSPbeta phage protein; lytic transglycosylase7e-1478.2
NC_019908:982471:989710989710990426717Brachyspira pilosicoli P43/6/78 chromosome, complete genomelytic transglycosylase7e-1478.2
NC_014330:2268773:228178822817882282501714Brachyspira pilosicoli 95/1000 chromosome, complete genomelytic transglycosylase9e-1477.8
NC_014311:1888686:189788118978811898510630Ralstonia solanacearum PSI07 chromosome, complete genometransglycosylase8e-1477.8
NC_017179:281069:299909299909300577669Clostridium difficile BI1, complete genometransglycosylase2e-1376.6
NC_008593:2020473:203784220378422038495654Clostridium novyi NT, complete genomelytic murein transglycosylase, putative6e-1375.1
NC_007759:1571425:157745515774551578108654Syntrophus aciditrophicus SB, complete genomesoluble lytic murein transglycosylase7e-1374.7
NC_014376:3671441:368650836865083687230723Clostridium saccharolyticum WM1 chromosome, complete genomeLytic transglycosylase catalytic8e-1374.7
NC_014220:1858747:187483218748321875473642Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeLytic transglycosylase catalytic2e-1273.6
NC_015425:2277570:229041522904152291074660Clostridium botulinum BKT015925 chromosome, complete genomelytic murein transglycosylase2e-1273.6
NC_009664:533021:5479845479845490901107Kineococcus radiotolerans SRS30216, complete genomeLytic transglycosylase catalytic3e-1272.8
NC_015850:1155376:117330311733031173821519Acidithiobacillus caldus SM-1 chromosome, complete genomelytic transglycosylase3e-1272.4
NC_015850:2048251:211015521101552111087933Acidithiobacillus caldus SM-1 chromosome, complete genomelytic transglycosylase5e-1272
NC_000964:2146000:2248350224835022552076858Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-1170.9
NC_016627:793583:793583793583794260678Clostridium clariflavum DSM 19732 chromosome, complete genomelytic murein transglycosylase4e-1168.9
NC_011894:2184956:220462022046202205339720Methylobacterium nodulans ORS 2060, complete genomeLytic transglycosylase catalytic4e-1168.9
NC_015318:1455444:147780914778091478426618Hippea maritima DSM 10411 chromosome, complete genomelytic transglycosylase catalytic subunit5e-1168.6
NC_013194:963735:997671997671998336666Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeLytic transglycosylase catalytic1e-1067.4
NC_004757:2412161:241216124121612413066906Nitrosomonas europaea ATCC 19718, complete genomeSLT domain2e-1067
NC_015572:1421782:143602314360231436871849Methylomonas methanica MC09 chromosome, complete genomelytic transglycosylase catalytic subunit1e-1067
NC_009483:2854500:287564628756462876242597Geobacter uraniireducens Rf4 chromosome, complete genomelytic transglycosylase2e-1066.6
NC_010718:1959517:198001019800101980597588Natranaerobius thermophilus JW/NM-WN-LF, complete genomeLytic transglycosylase catalytic3e-1066.2
NC_013173:1356526:137746913774691377996528Desulfomicrobium baculatum DSM 4028, complete genomeLytic transglycosylase catalytic4e-1065.9
NC_012914:1824955:182495518249551825521567Paenibacillus sp. JDR-2, complete genomeLytic transglycosylase catalytic4e-1065.9
NC_014219:1736000:175182117518211752510690Bacillus selenitireducens MLS10 chromosome, complete genomeLytic transglycosylase catalytic4e-1065.5
NC_013173:1231213:123625212362521236854603Desulfomicrobium baculatum DSM 4028, complete genomeLytic transglycosylase catalytic6e-1065.1
NC_009012:3224000:323867632386763239362687Clostridium thermocellum ATCC 27405, complete genomeLytic transglycosylase, catalytic7e-1064.7
NC_013093:2599591:259959125995912600574984Actinosynnema mirum DSM 43827, complete genomeLytic transglycosylase catalytic7e-1064.7
NC_010814:2217153:224462722446272245265639Geobacter lovleyi SZ, complete genomeLytic transglycosylase catalytic8e-1064.7
NC_014733:1857020:188059718805971881241645Methylovorus sp. MP688 chromosome, complete genomelytic transglycosylase catalytic1e-0963.9
NC_011283:4170369:4194180419418041961051926Klebsiella pneumoniae 342 chromosome, complete genometransglycosylase SLT domain-containing protein1e-0963.9
NC_015437:697051:7302427302427320621821Selenomonas sputigena ATCC 35185 chromosome, complete genomeLytic transglycosylase catalytic2e-0963.2
NC_011772:1575674:159336415933641594149786Bacillus cereus G9842, complete genometransglycosylase, SLT family3e-0962.8
NC_017030:8766757:877403587740358774856822Corallococcus coralloides DSM 2259 chromosome, complete genometransglycosylase3e-0962.8
NC_007760:3735749:374974437497443750202459Anaeromyxobacter dehalogenans 2CP-C, complete genomeLytic transglycosylase, catalytic4e-0962.4
NC_009092:4337617:435105243510524351783732Shewanella loihica PV-4, complete genomeLytic transglycosylase, catalytic4e-0962.4
NC_014623:6150028:618544061854406186174735Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransglycosylase slt domain-containing protein4e-0962.4
NC_014550:3377834:3386168338616833872981131Arthrobacter arilaitensis Re117, complete genomeputative M23 family peptidase6e-0961.6
NC_013205:644914:6555986555986570401443Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Lytic transglycosylase catalytic6e-0961.6
NC_011660:1889504:189604518960451896713669Listeria monocytogenes HCC23 chromosome, complete genometransglycosylase1e-0860.8
NC_015711:5479879:550380255038025504542741Myxococcus fulvus HW-1 chromosome, complete genometransglycosylase SLT domain-containing protein1e-0860.8
NC_015850:1279372:127971012797101280270561Acidithiobacillus caldus SM-1 chromosome, complete genometransglycosylase1e-0860.5
NC_008555:696217:712724712724713407684Listeria welshimeri serovar 6b str. SLCC5334, complete genometransglycosylase, SLT family2e-0860.1
NC_010511:2079744:2132561213256121335831023Methylobacterium sp. 4-46 chromosome, complete genomelytic transglycosylase2e-0860.1
NC_020064:4125500:413714441371444138055912Serratia marcescens FGI94, complete genomesoluble lytic murein transglycosylase-like protein2e-0859.7
NC_013891:640784:657261657261657935675Listeria seeligeri serovar 1/2b str. SLCC3954, complete genometransglycosylase, SLT family3e-0859.3
NC_021182:2059143:208183620818362082390555Clostridium pasteurianum BC1, complete genomesoluble lytic murein transglycosylase-like protein3e-0859.3
NC_013592:956829:9840999840999851811083Dickeya dadantii Ech586, complete genomeLytic transglycosylase catalytic4e-0858.9
NC_016845:1285435:1323839132383913257641926Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,transglycosylase4e-0858.9
NC_020126:4430142:445184144518414452590750Myxococcus stipitatus DSM 14675, complete genometransglycosylase SLT domain-containing protein4e-0858.9
NC_010611:208268:223916223916224404489Acinetobacter baumannii ACICU, complete genomesoluble lytic murein transglycosylase, related regulatory protein8e-0858.2
NC_016845:2306744:2309391230939123113942004Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,lytic transglycosylase, catalytic9e-0857.8
NC_014500:1066911:1096350109635010974321083Dickeya dadantii 3937 chromosome, complete genomemembrane-bound lytic murein transglycosylase C9e-0857.8
NC_008262:2150944:216507121650712165616546Clostridium perfringens SM101, complete genomesecreted protein9e-0857.8
NC_001318:270488:2704882704882727012214Borrelia burgdorferi B31, complete genomehypothetical protein1e-0757.8
NC_011728:269853:2698532698532720062154Borrelia burgdorferi ZS7, complete genometransglycosylase1e-0757.8
NC_012962:3864000:3864463386446338655361074Photorhabdus asymbiotica, complete genomeMembrane-bound lytic murein transglycosylase C precursor1e-0757.4
NC_003366:2266757:228197822819782282523546Clostridium perfringens str. 13, complete genomehypothetical protein1e-0757.4
NC_008261:2481500:249581124958112496356546Clostridium perfringens ATCC 13124, complete genometransglycosylase, SLT family1e-0757.4
NC_014121:3627588:3644135364413536459041770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0757.4
NC_010410:3719599:372545937254593726067609Acinetobacter baumannii AYE, complete genomehypothetical protein2e-0757
NC_010172:57500:9066790667917581092Methylobacterium extorquens PA1, complete genomeLytic transglycosylase catalytic2e-0756.6
NC_015580:3252534:3252534325253432545011968Novosphingobium sp. PP1Y, complete genomelytic transglycosylase catalytic subunit subunit2e-0756.6
NC_007951:4608560:4634624463462446365911968Burkholderia xenovorans LB400 chromosome 1, complete sequenceTransglycosylase2e-0756.6
NC_010511:6067000:6100598610059861016201023Methylobacterium sp. 4-46 chromosome, complete genomelytic transglycosylase2e-0756.6
NC_015850:110364:123790123790124380591Acidithiobacillus caldus SM-1 chromosome, complete genomelytic transglycosylase2e-0756.6
NC_010278:1918000:1937451193745119385481098Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,murein transglycosylase C3e-0756.2
NC_010939:1986263:2000747200074720018441098Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeMembrane-bound lytic murein transglycosylase C precursor3e-0756.2
NC_009053:1942973:1975864197586419769611098Actinobacillus pleuropneumoniae L20, complete genomeMembrane-bound lytic murein transglycosylase C precursor3e-0756.2
NC_020126:8984500:898707289870728987959888Myxococcus stipitatus DSM 14675, complete genometransglycosylase SLT domain-containing protein3e-0755.8
NC_020211:4484817:4486250448625044873261077Serratia marcescens WW4, complete genomemembrane-bound lytic murein transglycosylase C4e-0755.8
NC_012779:261438:2762412762412773201080Edwardsiella ictaluri 93-146, complete genomemembrane-bound lytic murein transglycosylase C5e-0755.5
NC_009633:2137999:2137999213799921397591761Alkaliphilus metalliredigens QYMF chromosome, complete genomelytic transglycosylase catalytic subunit5e-0755.5
NC_013523:959625:9807889807889830282241Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genomeLytic transglycosylase catalytic5e-0755.5
NC_010102:1829357:1849885184988518519662082Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-0755.1
NC_013508:275081:2932152932152942941080Edwardsiella tarda EIB202, complete genomemurein transglycosylase C7e-0755.1
NC_006156:271410:2692702692702714172148Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein7e-0755.1
NC_020211:2123819:2123819212381921258252007Serratia marcescens WW4, complete genomelytic transglycosylase catalytic subunit8e-0754.7
NC_020418:1397112:1418300141830014194151116Morganella morganii subsp. morganii KT, complete genomeMembrane-bound lytic murein transglycosylase C precursor1e-0653.9
NC_011662:1160887:118477911847791185693915Thauera sp. MZ1T, complete genomeLytic transglycosylase catalytic2e-0653.9
NC_002937:1578213:1603093160309316042291137Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetransglycosylase, SLT family2e-0653.5
NC_015061:3840463:3844310384431038453891080Rahnella sp. Y9602 chromosome, complete genomelytic transglycosylase catalytic2e-0653.1
NC_016818:3851542:3856033385603338571121080Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completelytic murein transglycosylase2e-0653.1
NC_014010:1850500:186479318647931865680888Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeLytic transglycosylase, catalytic3e-0652.8
NC_003295:1654000:1664549166454916693184770Ralstonia solanacearum GMI1000, complete genomehypothetical protein3e-0652.8
NC_013524:1207845:122879012287901229689900Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeLytic transglycosylase catalytic5e-0652
NC_015064:2341152:2361716236171623640612346Acidobacterium sp. MP5ACTX9 chromosome, complete genomeLytic transglycosylase catalytic6e-0651.6
NC_007759:1571425:1589039158903915910031965Syntrophus aciditrophicus SB, complete genomemembrane-bound lytic murein transglycosylase D precursor7e-0651.6