Pre_GI: BLASTP Hits

Some Help

Query: NC_004347:4007847:4014236 Shewanella oneidensis MR-1, complete genome

Start: 4014236, End: 4014463, Length: 228

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012668:2258854:228069922806992280908210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-1787.4
NC_012668:1623350:164392816439281644137210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-1787.4
NC_012668:160357:168333168333168542210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-1787.4
NC_009434:695582:749946749946750173228Pseudomonas stutzeri A1501, complete genomeCro/CI family transcriptional regulator1e-1684.7
NC_009901:4216206:422500142250014225207207Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, XRE family3e-1684
NC_009901:2272206:229964522996452299851207Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, XRE family3e-1684
NC_010334:609636:626708626708626914207Shewanella halifaxensis HAW-EB4, complete genometranscriptional regulator, XRE family6e-1682.8
NC_010506:4873487:488892448889244889130207Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, XRE family8e-1682.4
NC_009997:5188221:521110652111065211312207Shewanella baltica OS195, complete genometranscriptional regulator, XRE family6e-1579.7
NC_009665:5072413:509397950939795094185207Shewanella baltica OS185 chromosome, complete genomeXRE family transcriptional regulator6e-1579.7
NC_016901:5130147:515172851517285151934207Shewanella baltica OS678 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1579.7
NC_020829:940692:947744947744947956213Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein1e-1478.6
NC_009656:44500:901009010090321222Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-1477.4
NC_015633:2565753:258423625842362584445210Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein2e-1374.3
NC_018868:619113:654559654559654795237Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeCro/CI family transcriptional regulator4e-1270.1
NC_008740:220642:235926235926236135210Marinobacter aquaeolei VT8, complete genome9e-1268.9
NC_010682:460523:491925491925492170246Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, XRE family6e-0959.7
NC_010571:1334000:133858213385821338833252Opitutus terrae PB90-1, complete genometranscriptional regulator, XRE family7e-0959.3
NC_014006:3124818:313237831323783132620243Sphingobium japonicum UT26S chromosome 1, complete genomeXre-family transcriptional regulator1e-0858.5
NC_010322:4623867:467058446705844670829246Pseudomonas putida GB-1 chromosome, complete genomeXRE family transcriptional regulator1e-0858.5
NC_014216:2860342:286928428692842869517234Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family1e-0858.2
NC_007651:3560652:357327135732713573513243Burkholderia thailandensis E264 chromosome I, complete sequenceDNA-binding protein2e-0857.8
NC_017249:18493:345743457434855282Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0857.8
NC_004463:18497:345793457934860282Bradyrhizobium japonicum USDA 110, complete genomeprobable transcriptional regulator2e-0857.8
NC_014965:997344:101503010150301015260231Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein4e-0857
NC_009439:1297851:133053813305381330783246Pseudomonas mendocina ymp, complete genomeXRE family transcriptional regulator5e-0856.6
NC_018691:3041851:306006930600693060359291Alcanivorax dieselolei B5 chromosome, complete genomeputative transcriptional regulator6e-0856.2
NC_010002:2518599:253459725345972534992396Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family6e-0856.2
NC_008686:95326:116687116687116923237Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, XRE family8e-0855.8
NC_007510:3340008:334567233456723345986315Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, XRE family7e-0855.8
NC_010943:1332243:135334013533401353636297Stenotrophomonas maltophilia K279a, complete genomeputative HTH transcriptional regulator7e-0855.8
NC_010170:2246993:226460422646042264897294Bordetella petrii, complete genomepredicted transcriptional regulator7e-0855.8
NC_015677:285896:300214300214300459246Ramlibacter tataouinensis TTB310 chromosome, complete genomeXRE family transcriptional regulator9e-0855.5
NC_015186:2908387:292159829215982921819222Acidiphilium multivorum AIU301, complete genomeXre family transcriptional regulator1e-0755.5
NC_004459:2025436:203074620307462030976231Vibrio vulnificus CMCP6 chromosome I, complete sequencePredicted transcriptional regulator1e-0755.5
NC_014483:1146682:114946911494691149816348Paenibacillus polymyxa E681 chromosome, complete genomePutative HTH-type transcriptional regulator1e-0755.1
NC_016147:1961000:198513019851301985420291Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0755.1
NC_013739:5535945:555957955595795559845267Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family1e-0755.1
NC_016641:2894899:291399229139922914339348Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator2e-0754.7
NC_008322:373531:373304373304373534231Shewanella sp. MR-7, complete genometranscriptional regulator, XRE family2e-0754.3
NC_014910:242845:267842267842268135294Alicycliphilus denitrificans BC chromosome, complete genomehelix-turn-helix domain protein2e-0754.3
NC_002936:1395432:140162414016241401842219Dehalococcoides ethenogenes 195, complete genomeDNA-binding protein3e-0753.9
NC_012912:1701231:171734517173451717590246Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family3e-0753.9
NC_009667:1934818:194392819439281944158231Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceXRE family transcriptional regulator3e-0753.9
NC_013446:1648556:169582916958291696128300Comamonas testosteroni CNB-2, complete genometranscriptional regulator, XRE family4e-0753.5
NC_014311:3076519:311203031120303112257228Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein6e-0753.1
NC_012808:4137000:413802541380254138288264Methylobacterium extorquens AM1, complete genomehypothetical protein6e-0753.1
NC_010512:1015557:102764110276411027886246Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, XRE family5e-0753.1
NC_010571:4483500:448599644859964486226231Opitutus terrae PB90-1, complete genometranscriptional regulator, XRE family5e-0753.1
NC_015422:3184823:320448032044803204743264Alicycliphilus denitrificans K601 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0752.8
NC_007510:1959883:200793820079382008219282Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, XRE family7e-0752.8
NC_009667:1371924:137862013786201378910291Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceXRE family transcriptional regulator6e-0752.8
NC_014500:3097362:313932931393293139574246Dickeya dadantii 3937 chromosome, complete genomehypothetical protein6e-0752.8
NC_016641:872394:881627881627881998372Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator7e-0752.4
NC_014483:4740214:474950147495014749890390Paenibacillus polymyxa E681 chromosome, complete genomePredicted transcriptional regulator1e-0652
NC_016641:1530905:154211415421141542458345Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator sinR1e-0652
NC_006350:845513:873400873400873708309Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein1e-0652
NC_007650:2429307:245966124596612459864204Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein1e-0652
NC_013132:782846:785123785123785347225Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family1e-0652
NC_018080:2288700:231214223121422312387246Pseudomonas aeruginosa DK2 chromosome, complete genomeXRE family transcriptional regulator1e-0652
NC_006351:520500:521079521079521324246Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding regulatory protein1e-0651.6
NC_008061:2582000:259167425916742591919246Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, XRE family1e-0651.6
NC_008543:2666846:267507026750702675315246Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, XRE family1e-0651.6
NC_015593:2553500:257074025707402570958219Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete1e-0651.6
NC_016616:2997348:300945030094503009686237Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator2e-0650.8
NC_013421:478586:490944490944491180237Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, XRE family3e-0650.8
NC_010170:4463000:447427744742774474561285Bordetella petrii, complete genomeconserved hypothetical protein, DNA-binding3e-0650.4
NC_015590:145353:152549152549152821273Sinorhizobium meliloti AK83 chromosome 1, complete sequencehelix-turn-helix domain-containing protein3e-0650.4
NC_007508:2941889:295324729532472953522276Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein3e-0650.4
NC_009659:2849000:286908228690822869411330Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein3e-0650.4
NC_010617:774914:806803806803807018216Kocuria rhizophila DC2201, complete genomeXre family DNA-binding protein5e-0650.1
NC_014622:5683400:568439956843995684743345Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator4e-0650.1
NC_016830:3869572:389216638921663892420255Pseudomonas fluorescens F113 chromosome, complete genometranscriptional xre family4e-0650.1
NC_015572:1:100251002510264240Methylomonas methanica MC09 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0650.1
NC_020409:1173796:118106611810661181392327Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, XRE family5e-0649.7
NC_003047:536151:546632546632546901270Sinorhizobium meliloti 1021, complete genomeHYPOTHETICAL TRANSCRIPTION REGULATOR PROTEIN6e-0649.3
NC_007650:2429307:245827324582732458473201Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein7e-0649.3
NC_013739:2106662:211189521118952112176282Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family7e-0649.3
NC_012660:2045398:210077121007712101025255Pseudomonas fluorescens SBW25 chromosome, complete genomeputative HTH-type regulatory protein7e-0649.3
NC_006351:520500:522475522475522720246Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding regulatory protein8e-0649.3