Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3098278 Shigella flexneri 2a str. 301, complete genome

Start: 3098278, End: 3099120, Length: 843

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:313798331379833138825843Shigella flexneri 2002017 chromosome, complete genomehypothetical protein4e-166583
NC_004741:3041294:308910530891053089947843Shigella flexneri 2a str. 2457T, complete genomehypothetical protein4e-166583
NC_013353:3669500:367350536735053674347843Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-159561
AP010958:3669500:367350536735053674347843Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-159561
NC_008253:3161311:317591431759143176756843Escherichia coli 536, complete genomehypothetical protein1e-158558
NC_013364:3701895:375851637585163759358843Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-158558
NC_011083:4547825:456346945634694564338870Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein4e-151533
NC_011750:4390000:441412244141224414964843Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-149528
NC_004431:4319152:434094043409404341782843Escherichia coli CFT073, complete genomehypothetical protein5e-148523
NC_007946:1119000:114154011415401142382843Escherichia coli UTI89, complete genomehypothetical protein8e-145513
NC_012947:44512:483424834249187846Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-139494
NC_008253:334467:360025360025360849825Escherichia coli 536, complete genomehypothetical protein2e-136484
NC_009832:1946401:194640119464011947234834Serratia proteamaculans 568, complete genomehypothetical protein3e-108391
NC_015224:4386599:440557344055734406433861Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein9e-94343
NC_016902:4236680:423714542371454237978834Escherichia coli KO11FL chromosome, complete genomehypothetical protein5e-93340
CP002516:4236680:423714542371454237978834Escherichia coli KO11, complete genomehypothetical protein5e-93340
NC_016514:506611:526583526583527515933Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein7e-93340
NC_012917:3241196:326731932673193268152834Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-92338
NC_013961:441719:467493467493468326834Erwinia amylovora, complete genomehypothetical protein6e-92337
NC_013971:3296272:330297433029743303807834Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein6e-92337
NC_014618:690056:724777724777725610834Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-89328
NC_011601:4856717:486895248689524869785834Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein7e-89327
NC_015761:299386:323688323688324521834Salmonella bongori NCTC 12419, complete genomeprophage protein1e-88326
NC_011745:3405520:342622934262293426798570Escherichia coli ED1a chromosome, complete genome9e-88323
NC_005126:142500:143880143880144713834Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein9e-88323
NC_009436:522649:543427543427544260834Enterobacter sp. 638, complete genomehypothetical protein2e-87322
NC_003198:3881221:389765638976563898490835Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-85316
NC_015663:1869000:187050918705091871129621Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-54213
NC_002695:4584177:458496245849624585303342Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-43176
NC_002655:4653160:465394546539454654286342Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L1e-43176
NC_011353:4688000:468806646880664688407342Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-43176
NC_007651:3064530:313762131376213138604984Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-37155
NC_011000:1262324:130457513045751305381807Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-36153
NC_011000:2732330:277862627786262779432807Burkholderia cenocepacia J2315 chromosome 1, complete sequencecosnerved hypothetical protein2e-36152
NC_007434:3973145:399854039985403999346807Burkholderia pseudomallei 1710b chromosome I, complete sequencehypothetical protein5e-36151
NC_015381:1588742:160234716023471603153807Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-35149
NC_009076:3564500:360521936052193606025807Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein3e-34145
NC_016863:3905875:391249539124953912845351Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein6e-28124
NC_016860:3964000:397409539740953974442348Salmonella enterica subsp. enterica serovar Typhimurium strATP-binding protein6e-28124
NC_002655:4653160:465452646545264654672147Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L6e-1581.6
NC_013361:5580741:558327555832755583427153Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-1273.9
NC_011745:5114500:511841551184155118567153Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-1273.9
NC_007946:4875997:489650048965004896652153Escherichia coli UTI89, complete genomehypothetical protein2e-1169.7
NC_008253:4817864:483699248369924837150159Escherichia coli 536, complete genomehypothetical protein3e-1169.3
NC_011353:4688000:468868046886804688793114Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-1067
NC_010102:4745949:474832947483294748829501Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-0960.8
NC_016831:4517850:452384745238474524347501Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0859.7
NC_011205:4718239:472403647240364724536501Salmonella enterica subsp. enterica serovar Dublin str. CT_020218532e-0859.7